Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01142 ATGTATTTTGATGGGTATGGATATCGTGGAACATCATTTGAGCAAAGATATCAATGTTTCTCTGCATCATTTATTGATAAGTTTCTTCTGATCCCAGTTAATCTTTTCATCCTGCAGTCACACATTGAAACTGGAGATAGAATTATAATGCCTCCATCAGCCCTCGATCGCCTTGCTTCATTACAAATTGATTATCCAATGTTATTTGAGCTTCGAAATGATGCTGTTGAGCGAGTCTCTCATTGTGGGGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATTTACATGCCTTATTGGATGATGGAGAACATGCTTTTACAAGAAGGAGACCTAGTGCAAGTGAAGAATATCACTCTTCCAAAGGGAACCTATGTTAAATTACAACCTCACACAAAGGATTTTTTGGATATCTCAAATCCAAAAGCAATCTTAGAGACAACACTAAGGAATTTCTCCTGCCTCACCACTGGAGACAGTATCATGGTGGCATATAATAACAAGAAATATTACATTGACATAGTCGAAACAAAGCCATCCAATGCAATAAGTATCATTGAGACAGATTGTGAGGTGGATTTTGCACCTCCCCTGGATTACAAGGAACCAGAGAAGCCTGTTGCACCCATCAAGGGGAAAGAGCCAGTTGCAGAAGCTCTAGATGCCGAAGCCGAACCCAAATTTAGCGCTTTCACAGGAACAGGAAGACGTTTGGATGGTAAATCTTCAAATCTTCAGCCTCAGCCAATTTCATCTTCTAGGTCCTCTGGTGTGAAGCAATCAGGTGGTAGTGGTAGATATGGCCATTCGCAGCAGACTGCTGGTGCTGGATCTAGCTCAGTGAACGGAACTCGTCAGTCTCAGGGAAAGTTGGAGGCTTCAAAAGAGAGTAAAGAAGAGCAGCCTGAAAAGGAAGACCCCAAATTTCAGCCCTTCTCGGGGAAAAGGTACTCACTGCGGGGCTGA 963 42.58 MYFDGYGYRGTSFEQRYQCFSASFIDKFLLIPVNLFILQSHIETGDRIIMPPSALDRLASLQIDYPMLFELRNDAVERVSHCGVLEFVAEEGMIYMPYWMMENMLLQEGDLVQVKNITLPKGTYVKLQPHTKDFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYKEPEKPVAPIKGKEPVAEALDAEAEPKFSAFTGTGRRLDGKSSNLQPQPISSSRSSGVKQSGGSGRYGHSQQTAGAGSSSVNGTRQSQGKLEASKESKEEQPEKEDPKFQPFSGKRYSLRG 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19929495 19934866 - Lsi11G011420.1 Lsi11g01142 674309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01142 320 PANTHER UBIQUITIN FUSION DEGRADATION PROTEIN 1 HOMOLOG 1 320 - -
Lsi11g01142 320 Pfam Ubiquitin fusion degradation protein UFD1 13 196 IPR004854 GO:0006511
Lsi11g01142 320 MobiDBLite consensus disorder prediction 290 310 - -
Lsi11g01142 320 Gene3D - 7 119 IPR042299 -
Lsi11g01142 320 MobiDBLite consensus disorder prediction 229 320 - -
Lsi11g01142 320 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 320 IPR004854 GO:0006511
Lsi11g01142 320 MobiDBLite consensus disorder prediction 235 289 - -
Lsi11g01142 320 Gene3D - 121 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01142 K14016 UFD1; ubiquitin fusion degradation protein 1 - csv:101214271 522.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00422 Lsi11g01142 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01142 Lsi-Chr11:19929495 Lsi11g01431 Lsi-Chr11:22854898 2.89E-31 dispersed
Lsi10g00422 Lsi-Chr10:6379533 Lsi11g01142 Lsi-Chr11:19929495 1.68E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g50 . . . . . . . . Cmo19g00707 . Cma02g00360 . Car02g00227 . Sed04g3898 Cpe04g00097 Cpe15g00566 Bhi05g01783 Tan02g0749 Cmetu01g0444 . . . . Cla02g00481 Cam02g0489 Cec02g0490 Cco02g0495 Clacu02g0492 Cmu02g0488 Cre02g0821 Cone12ag1191 Cone8ag1239 . . Lsi10g00422 Csa07g00042 Chy11g00330 Cme01g01333 . . . . . . . Bma08g00779 Sed01g0254 Cmo02g00363 . . Cma19g00698 . Car19g00540 . Cpe05g01296 Bhi10g01932 Tan05g1230 Cmetu11g1599 . Hepe08g0967 . . . . . . . . . Lsi11g01142 Csa02g01314 Chy01g00739 Cme11g00177
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002629 1 4 1 2 0 1 3 2 2 2 2 1 4 3 2 3 1 2 3 2 2 1 2 2 1 2 2 2 2 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01142 Lsi_Chr11 FPKM 42.69857 46.896114 9.745034 9.297896 3.73508 4.201855 4.602052 48.984615 49.256592 52.810844