Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01144 ATGGCGATAACTCTGAACAATGGCTTCAAGATGCCGCAAATTGGGTTAGGAGTTTGGCGTATGGAGAAGCAACAAATTAGAGACCTCATTATCAACGCCATTAAGATTGGTTATCGACATTTTGACTGCGCCAGTACCGCCTCGTCGCCTTCAACTCTCTGGAATTCTGACCATGGACATGTTCTTGGGGCTTGCAAGGACAGCTTAAAAAAGCTTCAACTACAATATTTGGATCTTTACTTGGTGCACTTCCCAATAGCCATAAAGCATACAGGAGTTGGGAATACAAAAAGTGAGAAGGATGAGGATGGGATGTTGGATATTGATACAACTATATCTTTAGAAACCACTTGGCATGCCATGGAAGATTTGGTTTCCACTGGTTTAGTTCGCAGTATTAGAATTAGCAACTACGATATATTTATGACAAGAGATTGTTTGGCATACTCAAAAGTGAAGCCTGCTGTGAACCAAATTGAAATGCATCCTTACTTTCAAAGAGAATCTCTTGTCAAATTTTGCCAAAAGCATGAGATTTGTGTCACAGCTCATACTCCTTTAGGGGGTGCTGCTGCAAATACTAATTCTTAA 591 40.44 MAITLNNGFKMPQIGLGVWRMEKQQIRDLIINAIKIGYRHFDCASTASSPSTLWNSDHGHVLGACKDSLKKLQLQYLDLYLVHFPIAIKHTGVGNTKSEKDEDGMLDIDTTISLETTWHAMEDLVSTGLVRSIRISNYDIFMTRDCLAYSKVKPAVNQIEMHPYFQRESLVKFCQKHEICVTAHTPLGGAAANTNS 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19958705 19962958 + Lsi11G011440.1 Lsi11g01144 674311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01144 196 Gene3D - 1 195 IPR036812 -
Lsi11g01144 196 PANTHER NAD(P)-LINKED OXIDOREDUCTASE SUPERFAMILY PROTEIN 51 195 - -
Lsi11g01144 196 PANTHER ALDO/KETO REDUCTASE 3 46 - -
Lsi11g01144 196 PANTHER ALDO/KETO REDUCTASE 51 195 - -
Lsi11g01144 196 Pfam Aldo/keto reductase family 63 191 IPR023210 -
Lsi11g01144 196 PANTHER NAD(P)-LINKED OXIDOREDUCTASE SUPERFAMILY PROTEIN 3 46 - -
Lsi11g01144 196 SUPERFAMILY NAD(P)-linked oxidoreductase 3 190 IPR036812 -
Lsi11g01144 196 PRINTS Aldo-keto reductase signature 155 184 IPR020471 GO:0016491
Lsi11g01144 196 PRINTS Aldo-keto reductase signature 33 57 IPR020471 GO:0016491
Lsi11g01144 196 PRINTS Aldo-keto reductase signature 121 138 IPR020471 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01144 - - - csv:101214993 337.035
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01144 Lsi-Chr11:19958705 Lsi01g01456 Lsi-Chr1:12690328 1.49E-36 dispersed
Lsi11g01143 Lsi-Chr11:19936547 Lsi11g01144 Lsi-Chr11:19958705 6.10E-63 tandem
Lsi11g01144 Lsi-Chr11:19958705 Lsi11g01145 Lsi-Chr11:19986946 1.16E-114 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g53 . . . . . . . . Cmo19g00708 . . . . . Sed05g2284 . Cpe15g00567 Bhi05g01781 Tan02g0747 Cmetu01g1228 . Hepe02g0463 . . Cla02g00479 Cam02g0487 Cec02g0488 Cco02g0493 Clacu02g0490 Cmu02g0485 Cre02g0819 Cone12ag1195 Cone8ag1243 . . . Csa07g00045 . Cme01g01322 . . . . . . . . . . . . Cma19g00699 . Car19g00541 . . . . . . . . . . . . . . . . Lsi11g01144 . Chy01g00736 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002236 1 2 1 1 0 3 1 2 2 2 3 4 1 2 4 1 3 3 1 2 4 2 2 2 3 3 1 3 1 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01144 Lsi_Chr11 FPKM 5.656863 7.019176 1.972952 2.709385 1.473308 0.659557 0.912311 3.82951 3.588374 3.122324