Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01148 ATGGATGATGGCCGCCAACATGAAAATGGGAGGCACAAACTAGATTATTTCAGAGGGAGCCCCTCACCATGGAATATGGTGCCCCCGCATCATGTAAAGGAACCAAATGCCTTGGTCATGAACAAGAAGATCATGTCCATCATAGCTGAGAGAGATGCTGCTATTCGGGAGCGGAATTTAGCACTATCTGAGAAGAATGATGCATTGGCTGCACGTGATGAGGCCCTCCGGCAGCGTGACGAGGCACTTGCACAGCGTGATTCTGCATTAATGGAAAGGGACAATGCCCTTGCTGCCCTTGAAATTCGTGATAATGCTTCTAACTTTTCTCTTGGTGGTGGGATTCAACGCAAAACAAAGCGATTGCACCATTTATCTAATCATATGCCAAACATGTCTGAAACTCCCTATGGTACAAAAGACGTGCATATAACTGATGCCTTTCCAATTACAGTTATAGCTTCTGAAGCTGTTAAGTCTCAACAGGGAAAGCGAATGAAGGATAACAAGTCAGTTTCATCAAAGACATCAAAGCCGCCAAGGAAGAAGGTCGGCGAAGATTTGAATCGACACGCTGCCACTGATGGTACAAAATACAGAACTGACTGGGATGGTCAGGATGTGGGTTTGAATCTTATAAGTTTTGATGATTCATCTATGCCAGCTCCAATTTGCTCGTGTACTGGACTTGCAAGACAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCGTCGTGTTGTACCACCCATATGTCCATGTATCCACTTCCACATATGCCTAATAAACGCCATGCCCGTATGGGTGGTCGGAAAATGAGTGGAAGTGTTTTTACAAAATTGCTTAGTCGACTAGCAGCAGCAGGTCACGATCTGTCGATACCAGTGGATCTTAAGGACCACTGGGCGAGACACGGTACAAATCGCTACATAACAATCAGGTAG 942 45.65 MDDGRQHENGRHKLDYFRGSPSPWNMVPPHHVKEPNALVMNKKIMSIIAERDAAIRERNLALSEKNDALAARDEALRQRDEALAQRDSALMERDNALAALEIRDNASNFSLGGGIQRKTKRLHHLSNHMPNMSETPYGTKDVHITDAFPITVIASEAVKSQQGKRMKDNKSVSSKTSKPPRKKVGEDLNRHAATDGTKYRTDWDGQDVGLNLISFDDSSMPAPICSCTGLARQCYKWGNGGWQSSCCTTHMSMYPLPHMPNKRHARMGGRKMSGSVFTKLLSRLAAAGHDLSIPVDLKDHWARHGTNRYITIR 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20002856 20004687 + Lsi11G011480.1 Lsi11g01148 674315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01148 313 MobiDBLite consensus disorder prediction 159 200 - -
Lsi11g01148 313 MobiDBLite consensus disorder prediction 161 200 - -
Lsi11g01148 313 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 313 - -
Lsi11g01148 313 SMART GAGA_bind_2 1 313 IPR010409 -
Lsi11g01148 313 Coils Coil 65 92 - -
Lsi11g01148 313 Pfam GAGA binding protein-like family 1 313 IPR010409 -
Lsi11g01148 313 PANTHER - 1 313 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01148 - - - csv:101215473 616.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00717 Lsi-Chr9:8228722 Lsi11g01148 Lsi-Chr11:20002856 1.51E-38 dispersed
Lsi11g01148 Lsi-Chr11:20002856 Lsi08g01338 Lsi-Chr8:21684989 1.99E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g55 . . . . . Bpe12g00098 . . Cmo19g00710 . . . . . Sed11g1487 Cpe04g00095 Cpe15g00568 Bhi05g01776 Tan02g2047 Cmetu03g1142 . . . . Cla02g00476 Cam02g0483 Cec02g0485 Cco02g0490 Clacu02g0486 Cmu02g0481 Cre02g0816 Cone12ag1196 Cone8ag1244 . . . Csa07g00049 . Cme01g01320 . Blo13g00531 Bda15g01061 . . . . Bma08g00777 . . . . Cma19g00701 . Car19g00543 . . . . . . . . . . . . . . . . Lsi11g01148 . Chy01g00732 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00717 . 289 568 BBR/BPC Transcription factor family AT2G01930 56.4 1.5e-82 303.1
Lsi09g00717 . 450 568 BBR/BPC Transcription factor family AT2G35550 59.7 6.5e-41 164.5
Lsi08g01338 . 228 342 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Lsi11g01148 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
Lsi08g01338 . 236 342 BBR/BPC Transcription factor family AT1G68120 57.0 3.0e-37 152.5
Lsi11g01148 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.2 3.7e-84 308.5
Lsi11g01148 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.7 1.3e-70 263.5
Lsi08g01338 . 89 342 BBR/BPC Transcription factor family AT5G42520 57.3 3.2e-69 258.8
Lsi09g00717 . 450 568 BBR/BPC Transcription factor family AT2G35550 59.7 6.5e-41 164.5
Lsi08g01338 . 228 342 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Lsi11g01148 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006274 1 3 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26189 PF06217 GAGA_bind 4.60E-101 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01148 Lsi_Chr11 FPKM 17.944635 18.363913 19.350386 14.981188 15.982644 16.506945 16.918833 16.031218 16.147583 17.479971