Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01149 | ATGGGTGATACTGAAGATGCTCGTACTGATAACTTACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTACTTTAAGGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCATTTTCAGTCGAATTTTCTTGGGGATAATAATAGAAGAATTGGGATACCTCCTTGTCCAAACTCACCGCAGATCCCGCCAATCTCACCGTATTCTCAGATTGCGGTATCGCGTCCGATGAACCAGCAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCTCCATTTCGTGACTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCTGATACATCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATACGAGGGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCTCATAGGCGGTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGCTCTGGTGGATTGGAGCGATCAACAAGTAGTAAAGAGAATGGGGGCATATTTAAGCCGGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCATTGATAACAACTTGGAAGGAATGGGTGAAAAGAAGTCCGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATCTGTTCAACTCCTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAAAGGCAGTGGAACAAAGACAGGGGGTGACAGCAGTGATAATGAGGCAGAAAGCAGTGTGAACGAAAGTGGGGATAACTCTCAAATGCCTGGATTGAATTCGTCTGCGGAGAAGAGGGAGGGGATTAAACGGACTGCAGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAATTTGGTGATGAGTCACCCAAAATGCCACCTACACCACCCGGCATTCGTCCAGGGCAACTTTCTTCAAACAACCTAGTTGACGGTAATTCAACTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGCGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAAATTGCACTAACCGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAAATGCGCTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCCACCACGCTGTCTGCCCAACTCACGCTTTTGCAGCGAGACTCAGTTGGACTTACAAACCAGAACAATGAGCTGAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGGTATTGACTATTTTTCTCTTAACTATTTTCCTTCATTACCTGAAAGGCTTTTCATCAAAGCATTGAATCCTCTAAATGAAGCGTTAACCGCGGAGGTTCAGAGATTGAAGCTCGCTACAACCGATATAAATGCGCAATCTCATCCCTCAAACGGGGTAATGGCTCAATCTTCTATGAACCACCATGGACTCCAGCTTCAGCTTCAGCAGCAGCAGCAACACCACCAACAACAACAGCAACATATGCAGCAGAATGGCAGTGCAACTACCAAACCAGAGTCCAACCAATAA | 1782 | 44.56 | MGDTEDARTDNLRNLQCSFGTSSSSTLRHHFSMDQLKISQMNCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQIPPISPYSQIAVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENGGIFKPASQFVKREPSLEKSIDNNLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSKGSGTKTGGDSSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSVSMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGIDYFSLNYFPSLPERLFIKALNPLNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNHHGLQLQLQQQQQHHQQQQQHMQQNGSATTKPESNQ | 593 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 20026140 | 20030633 | + | Lsi11G011490.1 | Lsi11g01149 | 674316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01149 | 593 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 104 | 593 | - | - | |
Lsi11g01149 | 593 | CDD | bZIP_plant_RF2 | 422 | 471 | IPR044759 | GO:0003700|GO:0006355 | |
Lsi11g01149 | 593 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN | 104 | 593 | - | - | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 275 | 289 | - | - | |
Lsi11g01149 | 593 | Pfam | bZIP transcription factor | 421 | 475 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 268 | 342 | - | - | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 181 | 216 | - | - | |
Lsi11g01149 | 593 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 419 | 482 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 92 | 249 | - | - | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 290 | 320 | - | - | |
Lsi11g01149 | 593 | SUPERFAMILY | Leucine zipper domain | 421 | 472 | IPR046347 | GO:0003700|GO:0006355 | |
Lsi11g01149 | 593 | SMART | brlzneu | 417 | 481 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 540 | 593 | - | - | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 355 | 381 | - | - | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 228 | 249 | - | - | |
Lsi11g01149 | 593 | Coils | Coil | 437 | 492 | - | - | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 46 | 80 | - | - | |
Lsi11g01149 | 593 | MobiDBLite | consensus disorder prediction | 92 | 115 | - | - | |
Lsi11g01149 | 593 | Gene3D | - | 420 | 473 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi11g01149 | Lsi-Chr11:20026140 | Lsi04g02035 | Lsi-Chr4:27466069 | 9.05E-17 | dispersed | |
Lsi11g01149 | Lsi-Chr11:20026140 | Lsi11g01151 | Lsi-Chr11:20041618 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26190 | PF00170 | bZIP_1 | 1.20E-08 | CL0018 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01149 | - | - | csv:101215703 | 959.518 |