Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01149 ATGGGTGATACTGAAGATGCTCGTACTGATAACTTACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTACTTTAAGGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCATTTTCAGTCGAATTTTCTTGGGGATAATAATAGAAGAATTGGGATACCTCCTTGTCCAAACTCACCGCAGATCCCGCCAATCTCACCGTATTCTCAGATTGCGGTATCGCGTCCGATGAACCAGCAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCTCCATTTCGTGACTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCTGATACATCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATACGAGGGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCTCATAGGCGGTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGCTCTGGTGGATTGGAGCGATCAACAAGTAGTAAAGAGAATGGGGGCATATTTAAGCCGGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCATTGATAACAACTTGGAAGGAATGGGTGAAAAGAAGTCCGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATCTGTTCAACTCCTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAAAGGCAGTGGAACAAAGACAGGGGGTGACAGCAGTGATAATGAGGCAGAAAGCAGTGTGAACGAAAGTGGGGATAACTCTCAAATGCCTGGATTGAATTCGTCTGCGGAGAAGAGGGAGGGGATTAAACGGACTGCAGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAATTTGGTGATGAGTCACCCAAAATGCCACCTACACCACCCGGCATTCGTCCAGGGCAACTTTCTTCAAACAACCTAGTTGACGGTAATTCAACTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGCGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAAATTGCACTAACCGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAAATGCGCTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCCACCACGCTGTCTGCCCAACTCACGCTTTTGCAGCGAGACTCAGTTGGACTTACAAACCAGAACAATGAGCTGAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGGTATTGACTATTTTTCTCTTAACTATTTTCCTTCATTACCTGAAAGGCTTTTCATCAAAGCATTGAATCCTCTAAATGAAGCGTTAACCGCGGAGGTTCAGAGATTGAAGCTCGCTACAACCGATATAAATGCGCAATCTCATCCCTCAAACGGGGTAATGGCTCAATCTTCTATGAACCACCATGGACTCCAGCTTCAGCTTCAGCAGCAGCAGCAACACCACCAACAACAACAGCAACATATGCAGCAGAATGGCAGTGCAACTACCAAACCAGAGTCCAACCAATAA 1782 44.56 MGDTEDARTDNLRNLQCSFGTSSSSTLRHHFSMDQLKISQMNCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQIPPISPYSQIAVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENGGIFKPASQFVKREPSLEKSIDNNLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSKGSGTKTGGDSSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSVSMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGIDYFSLNYFPSLPERLFIKALNPLNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNHHGLQLQLQQQQQHHQQQQQHMQQNGSATTKPESNQ 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20026140 20030633 + Lsi11G011490.1 Lsi11g01149 674316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01149 593 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 104 593 - -
Lsi11g01149 593 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700|GO:0006355
Lsi11g01149 593 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 104 593 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 275 289 - -
Lsi11g01149 593 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700|GO:0006355
Lsi11g01149 593 MobiDBLite consensus disorder prediction 268 342 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 181 216 - -
Lsi11g01149 593 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700|GO:0006355
Lsi11g01149 593 MobiDBLite consensus disorder prediction 92 249 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 290 320 - -
Lsi11g01149 593 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700|GO:0006355
Lsi11g01149 593 SMART brlzneu 417 481 IPR004827 GO:0003700|GO:0006355
Lsi11g01149 593 MobiDBLite consensus disorder prediction 540 593 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 355 381 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 228 249 - -
Lsi11g01149 593 Coils Coil 437 492 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 46 80 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 92 115 - -
Lsi11g01149 593 Gene3D - 420 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01149 - - - csv:101215703 959.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01149 Lsi-Chr11:20026140 Lsi04g02035 Lsi-Chr4:27466069 9.05E-17 dispersed
Lsi11g01149 Lsi-Chr11:20026140 Lsi11g01151 Lsi-Chr11:20041618 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g01159 . 1 219 bZIP Transcription Factor Family AT2G35530 61.4 2.8e-58 223.0
Lsi04g01023 . 10 359 bZIP Transcription Factor Family AT2G40620 54.7 4.0e-80 295.4
Lsi11g01151 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Lsi10g00496 CCT 1 233 bZIP Transcription Factor Family AT4G35040 63.0 1.5e-65 246.5
Lsi11g01199 CCT 1 232 bZIP Transcription Factor Family AT4G35040 63.4 1.9e-60 229.6
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT5G06950 78.1 1.8e-132 469.2
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT5G06950 76.4 8.9e-132 466.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT5G06950 69.6 9.6e-118 420.2
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT5G06950 67.7 9.6e-110 393.7
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT5G06950 60.8 6.9e-92 334.3
Lsi03g00453 . 100 334 bZIP Transcription Factor Family AT5G06950 51.8 9.5e-57 217.6
Lsi08g00928 . 642 935 bZIP Transcription Factor Family AT1G08320 61.0 1.6e-97 353.2
Lsi03g01716 . 198 514 bZIP Transcription Factor Family AT1G08320 59.0 1.5e-95 346.7
Lsi04g00016 . 97 384 bZIP Transcription Factor Family AT1G08320 60.1 3.4e-92 335.5
Lsi08g00395 . 177 467 bZIP Transcription Factor Family AT1G08320 59.1 3.1e-90 328.9
Lsi03g01615 . 178 470 bZIP Transcription Factor Family AT1G08320 55.3 1.4e-82 303.5
Lsi03g00118 . 165 349 bZIP Transcription Factor Family AT1G08320 52.9 9.9e-68 254.2
Lsi10g01166 . 123 325 bZIP Transcription Factor Family AT1G08320 57.1 1.9e-63 240.0
Lsi10g00496 CCT 1 267 bZIP Transcription Factor Family AT2G16770 59.7 4.5e-67 251.5
Lsi11g01199 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.6 4.3e-62 235.0
Lsi08g00928 . 637 935 bZIP Transcription Factor Family AT5G06960 79.0 1.2e-122 436.4
Lsi04g00016 . 74 384 bZIP Transcription Factor Family AT5G06960 74.3 1.4e-118 422.9
Lsi08g00395 . 162 467 bZIP Transcription Factor Family AT5G06960 67.6 1.8e-105 379.4
Lsi03g01615 . 156 470 bZIP Transcription Factor Family AT5G06960 64.4 2.3e-97 352.4
Lsi03g01716 . 207 514 bZIP Transcription Factor Family AT5G06960 60.1 3.6e-90 328.6
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT5G06960 50.8 9.5e-59 224.2
Lsi11g01151 . 1 517 bZIP Transcription Factor Family AT4G38900 59.1 3.3e-131 465.7
Lsi11g01149 . 1 536 bZIP Transcription Factor Family AT4G38900 56.4 1.4e-126 450.3
Lsi11g01151 . 64 545 bZIP Transcription Factor Family AT2G21230 53.0 7.0e-99 358.2
Lsi11g01421 . 1 248 bZIP Transcription Factor Family AT2G42380 57.1 3.5e-57 218.8
Lsi08g01479 CCT,ECH 6 353 bZIP Transcription Factor Family AT1G45249 53.8 7.3e-83 304.7
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT3G12250 78.8 1.2e-133 473.0
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT3G12250 75.8 2.9e-130 461.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT3G12250 68.7 1.1e-116 416.8
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT3G12250 68.4 6.7e-111 397.5
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT3G12250 60.1 7.7e-91 330.9
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT3G12250 50.4 6.5e-58 221.5
Lsi08g00395 . 16 467 bZIP Transcription Factor Family AT1G68640 62.3 4.1e-143 505.0
Lsi08g00928 . 606 935 bZIP Transcription Factor Family AT1G68640 64.2 2.2e-112 402.9
Lsi04g00016 . 51 384 bZIP Transcription Factor Family AT1G68640 64.4 3.5e-110 395.6
Lsi03g01615 . 135 470 bZIP Transcription Factor Family AT1G68640 60.5 1.5e-100 363.6
Lsi03g01716 . 209 514 bZIP Transcription Factor Family AT1G68640 55.5 7.0e-87 318.2
Lsi08g00550 . 8 341 bZIP Transcription Factor Family AT1G43700 50.7 1.4e-58 223.8
Lsi05g02094 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 1.6e-81 300.1
Lsi05g01348 . 42 373 bZIP Transcription Factor Family AT2G31370 70.0 4.4e-109 391.7
Lsi05g01346 . 1 359 bZIP Transcription Factor Family AT2G31370 62.4 2.1e-103 372.9
Lsi04g02035 . 1 250 bZIP Transcription Factor Family AT3G58120 51.6 4.8e-41 165.2
Lsi08g00619 . 17 321 bZIP Transcription Factor Family AT3G56850 56.8 1.2e-71 266.9
Lsi07g01159 . 37 219 bZIP Transcription Factor Family AT1G32150 61.7 7.2e-56 214.9
Lsi05g01348 . 10 368 bZIP Transcription Factor Family AT1G06070 68.5 7.7e-120 427.6
Lsi05g01346 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 7.7e-120 427.6
Lsi08g00550 . 145 342 bZIP Transcription Factor Family AT1G06070 54.9 3.3e-38 156.4
Lsi11g01151 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
Lsi08g01479 CCT,ECH 6 353 bZIP Transcription Factor Family AT1G45249 53.8 7.3e-83 304.7
Lsi07g01159 . 1 219 bZIP Transcription Factor Family AT2G35530 61.4 2.8e-58 223.0
Lsi04g01023 . 10 359 bZIP Transcription Factor Family AT2G40620 54.7 4.0e-80 295.4
Lsi11g01151 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Lsi10g00496 CCT 1 233 bZIP Transcription Factor Family AT4G35040 63.0 1.5e-65 246.5
Lsi11g01199 CCT 1 232 bZIP Transcription Factor Family AT4G35040 63.4 1.9e-60 229.6
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT5G06950 78.1 1.8e-132 469.2
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT5G06950 76.4 8.9e-132 466.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT5G06950 69.6 9.6e-118 420.2
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT5G06950 67.7 9.6e-110 393.7
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT5G06950 60.8 6.9e-92 334.3
Lsi03g00453 . 100 334 bZIP Transcription Factor Family AT5G06950 51.8 9.5e-57 217.6
Lsi08g00928 . 642 935 bZIP Transcription Factor Family AT1G08320 61.0 1.6e-97 353.2
Lsi03g01716 . 198 514 bZIP Transcription Factor Family AT1G08320 59.0 1.5e-95 346.7
Lsi04g00016 . 97 384 bZIP Transcription Factor Family AT1G08320 60.1 3.4e-92 335.5
Lsi08g00395 . 177 467 bZIP Transcription Factor Family AT1G08320 59.1 3.1e-90 328.9
Lsi03g01615 . 178 470 bZIP Transcription Factor Family AT1G08320 55.3 1.4e-82 303.5
Lsi03g00118 . 165 349 bZIP Transcription Factor Family AT1G08320 52.9 9.9e-68 254.2
Lsi10g01166 . 123 325 bZIP Transcription Factor Family AT1G08320 57.1 1.9e-63 240.0
Lsi10g00496 CCT 1 267 bZIP Transcription Factor Family AT2G16770 59.7 4.5e-67 251.5
Lsi11g01199 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.6 4.3e-62 235.0
Lsi08g00928 . 637 935 bZIP Transcription Factor Family AT5G06960 79.0 1.2e-122 436.4
Lsi04g00016 . 74 384 bZIP Transcription Factor Family AT5G06960 74.3 1.4e-118 422.9
Lsi08g00395 . 162 467 bZIP Transcription Factor Family AT5G06960 67.6 1.8e-105 379.4
Lsi03g01615 . 156 470 bZIP Transcription Factor Family AT5G06960 64.4 2.3e-97 352.4
Lsi03g01716 . 207 514 bZIP Transcription Factor Family AT5G06960 60.1 3.6e-90 328.6
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT5G06960 50.8 9.5e-59 224.2
Lsi11g01151 . 1 517 bZIP Transcription Factor Family AT4G38900 59.1 3.3e-131 465.7
Lsi11g01149 . 1 536 bZIP Transcription Factor Family AT4G38900 56.4 1.4e-126 450.3
Lsi11g01151 . 64 545 bZIP Transcription Factor Family AT2G21230 53.0 7.0e-99 358.2
Lsi11g01421 . 1 248 bZIP Transcription Factor Family AT2G42380 57.1 3.5e-57 218.8
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT3G12250 78.8 1.2e-133 473.0
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT3G12250 75.8 2.9e-130 461.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT3G12250 68.7 1.1e-116 416.8
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT3G12250 68.4 6.7e-111 397.5
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT3G12250 60.1 7.7e-91 330.9
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT3G12250 50.4 6.5e-58 221.5
Lsi08g00395 . 16 467 bZIP Transcription Factor Family AT1G68640 62.3 4.1e-143 505.0
Lsi08g00928 . 606 935 bZIP Transcription Factor Family AT1G68640 64.2 2.2e-112 402.9
Lsi04g00016 . 51 384 bZIP Transcription Factor Family AT1G68640 64.4 3.5e-110 395.6
Lsi03g01615 . 135 470 bZIP Transcription Factor Family AT1G68640 60.5 1.5e-100 363.6
Lsi03g01716 . 209 514 bZIP Transcription Factor Family AT1G68640 55.5 7.0e-87 318.2
Lsi08g00550 . 8 341 bZIP Transcription Factor Family AT1G43700 50.7 1.4e-58 223.8
Lsi05g02094 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 1.6e-81 300.1
Lsi05g01348 . 42 373 bZIP Transcription Factor Family AT2G31370 70.0 4.4e-109 391.7
Lsi05g01346 . 1 359 bZIP Transcription Factor Family AT2G31370 62.4 2.1e-103 372.9
Lsi04g02035 . 1 250 bZIP Transcription Factor Family AT3G58120 51.6 4.8e-41 165.2
Lsi08g00619 . 17 321 bZIP Transcription Factor Family AT3G56850 56.8 1.2e-71 266.9
Lsi07g01159 . 37 219 bZIP Transcription Factor Family AT1G32150 61.7 7.2e-56 214.9
Lsi05g01348 . 10 368 bZIP Transcription Factor Family AT1G06070 68.5 7.7e-120 427.6
Lsi05g01346 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 7.7e-120 427.6
Lsi08g00550 . 145 342 bZIP Transcription Factor Family AT1G06070 54.9 3.3e-38 156.4
Lsi11g01151 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002239 3 3 2 2 2 2 0 2 2 1 2 2 4 2 2 4 2 2 2 2 2 1 2 2 1 2 2 5 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26190 PF00170 bZIP_1 1.20E-08 CL0018 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01149 Lsi_Chr11 FPKM 0.466135 0.0 2.24663 2.930101 1.394549 1.582051 1.071218 4.360463 4.572517 4.12339