Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01149 ATGGGTGATACTGAAGATGCTCGTACTGATAACTTACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTACTTTAAGGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCATTTTCAGTCGAATTTTCTTGGGGATAATAATAGAAGAATTGGGATACCTCCTTGTCCAAACTCACCGCAGATCCCGCCAATCTCACCGTATTCTCAGATTGCGGTATCGCGTCCGATGAACCAGCAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCTCCATTTCGTGACTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCTGATACATCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATACGAGGGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCTCATAGGCGGTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGCTCTGGTGGATTGGAGCGATCAACAAGTAGTAAAGAGAATGGGGGCATATTTAAGCCGGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCATTGATAACAACTTGGAAGGAATGGGTGAAAAGAAGTCCGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATCTGTTCAACTCCTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAAAGGCAGTGGAACAAAGACAGGGGGTGACAGCAGTGATAATGAGGCAGAAAGCAGTGTGAACGAAAGTGGGGATAACTCTCAAATGCCTGGATTGAATTCGTCTGCGGAGAAGAGGGAGGGGATTAAACGGACTGCAGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAATTTGGTGATGAGTCACCCAAAATGCCACCTACACCACCCGGCATTCGTCCAGGGCAACTTTCTTCAAACAACCTAGTTGACGGTAATTCAACTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGCGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAAATTGCACTAACCGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAAATGCGCTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCCACCACGCTGTCTGCCCAACTCACGCTTTTGCAGCGAGACTCAGTTGGACTTACAAACCAGAACAATGAGCTGAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGGTATTGACTATTTTTCTCTTAACTATTTTCCTTCATTACCTGAAAGGCTTTTCATCAAAGCATTGAATCCTCTAAATGAAGCGTTAACCGCGGAGGTTCAGAGATTGAAGCTCGCTACAACCGATATAAATGCGCAATCTCATCCCTCAAACGGGGTAATGGCTCAATCTTCTATGAACCACCATGGACTCCAGCTTCAGCTTCAGCAGCAGCAGCAACACCACCAACAACAACAGCAACATATGCAGCAGAATGGCAGTGCAACTACCAAACCAGAGTCCAACCAATAA 1782 44.56 MGDTEDARTDNLRNLQCSFGTSSSSTLRHHFSMDQLKISQMNCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQIPPISPYSQIAVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENGGIFKPASQFVKREPSLEKSIDNNLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSKGSGTKTGGDSSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSVSMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGIDYFSLNYFPSLPERLFIKALNPLNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNHHGLQLQLQQQQQHHQQQQQHMQQNGSATTKPESNQ 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20026140 20030633 + Lsi11G011490.1 Lsi11g01149 674316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01149 593 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 104 593 - -
Lsi11g01149 593 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700|GO:0006355
Lsi11g01149 593 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 104 593 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 275 289 - -
Lsi11g01149 593 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700|GO:0006355
Lsi11g01149 593 MobiDBLite consensus disorder prediction 268 342 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 181 216 - -
Lsi11g01149 593 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700|GO:0006355
Lsi11g01149 593 MobiDBLite consensus disorder prediction 92 249 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 290 320 - -
Lsi11g01149 593 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700|GO:0006355
Lsi11g01149 593 SMART brlzneu 417 481 IPR004827 GO:0003700|GO:0006355
Lsi11g01149 593 MobiDBLite consensus disorder prediction 540 593 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 355 381 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 228 249 - -
Lsi11g01149 593 Coils Coil 437 492 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 46 80 - -
Lsi11g01149 593 MobiDBLite consensus disorder prediction 92 115 - -
Lsi11g01149 593 Gene3D - 420 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01149 Lsi-Chr11:20026140 Lsi04g02035 Lsi-Chr4:27466069 9.05E-17 dispersed
Lsi11g01149 Lsi-Chr11:20026140 Lsi11g01151 Lsi-Chr11:20041618 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26190 PF00170 bZIP_1 1.20E-08 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01149 - - csv:101215703 959.518