Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01151 ATGGGTGATACTGAAGATGCTAACACTGAAAACATGCGAAATCTTCAATGTTCGTATGGAGTATCTTCTTCTTCAGCTGGAAATCTTCCTTTCTCAATGGATCAACTTAAAATTTCCCAAATGAACTGCTCACAAATCCGTCCACCGCACTTCCAGTCAAATTTTCTTGGGGATAATAGTAGAAGAATTGGGATACCTCCTAGCCCCAACTCGCCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCCCGTCCGATGAATCAGCAAAATTATAACCCAGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCCTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCGTCTCCATTTCGTGAATCCCCAACTACATCGAATTCAGATCAGGTTTCTGCGGATACATCAATGGAGGATAGGGATAATAGTTCACATGGTTTGTTGCCTCCTTCACCTTATATGAGAGTCAATTCTTCTAAGATGGGAGATTCTTTGCCTCCTCGTAAAGCACATAGGCGGTCTAGCAGTGATATCCCATTTGGATTATCTTCAATGATTCAGCCATCTTCTCTTCTCCCATTCAGTAGCTCTGGTGGAATGGAGCGATCAACAAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCTGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGCGAGAGGAAATCTGATGGGGACAGCGTGGACGACTTATTTTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCATGAGAATCGTGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGTGGGGATAGCGCTCAAATGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATCAAACGGACCGCAGGGGGAGATATTGCTCCGACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAATTTGGCGATGAGTCTCCCAAAATGCCTCCTACACCACCTGGCGTTCGTCCGGGGCAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCATTGACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACACTTTTACAGAGAGATTCAGTTGGGCTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAATTACGGGATGCTCTTAACGAAGCCTTAACCGCGGAAGTTCAGAGATTGAAACTCGCTACAACGGAGCTAAACGCGCAATCCCATCCCTCTAATGGAGTAATGCCCCAATCTTCCATCAATCACCATAGCCTCCAGCTTCAGCTTCAGCACCACCACCAACAACAGCAACAGATGCAGCAGAATGGGAGTGCAACCACAAAACCAGAATCCAACCAATAA 1704 44.84 MGDTEDANTENMRNLQCSYGVSSSSAGNLPFSMDQLKISQMNCSQIRPPHFQSNFLGDNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHGLLPPSPYMRVNSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSSLLPFSSSGGMERSTSSKENAGLLKPASQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMPQSSINHHSLQLQLQHHHQQQQQMQQNGSATTKPESNQ 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20041618 20044762 + Lsi11G011510.1 Lsi11g01151 674318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01151 567 SUPERFAMILY Leucine zipper domain 422 473 IPR046347 GO:0003700|GO:0006355
Lsi11g01151 567 Pfam bZIP transcription factor 422 476 IPR004827 GO:0003700|GO:0006355
Lsi11g01151 567 MobiDBLite consensus disorder prediction 1 25 - -
Lsi11g01151 567 MobiDBLite consensus disorder prediction 49 250 - -
Lsi11g01151 567 MobiDBLite consensus disorder prediction 289 320 - -
Lsi11g01151 567 Gene3D - 421 473 - -
Lsi11g01151 567 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 562 - -
Lsi11g01151 567 MobiDBLite consensus disorder prediction 181 216 - -
Lsi11g01151 567 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 562 - -
Lsi11g01151 567 MobiDBLite consensus disorder prediction 68 82 - -
Lsi11g01151 567 Coils Coil 501 521 - -
Lsi11g01151 567 MobiDBLite consensus disorder prediction 357 380 - -
Lsi11g01151 567 MobiDBLite consensus disorder prediction 228 250 - -
Lsi11g01151 567 CDD bZIP_plant_RF2 423 472 IPR044759 GO:0003700|GO:0006355
Lsi11g01151 567 Coils Coil 438 493 - -
Lsi11g01151 567 MobiDBLite consensus disorder prediction 49 67 - -
Lsi11g01151 567 SMART brlzneu 418 482 IPR004827 GO:0003700|GO:0006355
Lsi11g01151 567 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 420 483 IPR004827 GO:0003700|GO:0006355
Lsi11g01151 567 MobiDBLite consensus disorder prediction 83 115 - -
Lsi11g01151 567 MobiDBLite consensus disorder prediction 539 567 - -
Lsi11g01151 567 MobiDBLite consensus disorder prediction 268 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01485 Lsi-Chr10:18966125 Lsi11g01151 Lsi-Chr11:20041618 5.22E-52 dispersed
Lsi11g01151 Lsi-Chr11:20041618 Lsi11g01421 Lsi-Chr11:22748437 9.69E-21 dispersed
Lsi11g01149 Lsi-Chr11:20026140 Lsi11g01151 Lsi-Chr11:20041618 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26191 PF00170 bZIP_1 7.50E-09 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01151 - - cpep:111776417 936.021