Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01151 | ATGGGTGATACTGAAGATGCTAACACTGAAAACATGCGAAATCTTCAATGTTCGTATGGAGTATCTTCTTCTTCAGCTGGAAATCTTCCTTTCTCAATGGATCAACTTAAAATTTCCCAAATGAACTGCTCACAAATCCGTCCACCGCACTTCCAGTCAAATTTTCTTGGGGATAATAGTAGAAGAATTGGGATACCTCCTAGCCCCAACTCGCCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCCCGTCCGATGAATCAGCAAAATTATAACCCAGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCCTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCGTCTCCATTTCGTGAATCCCCAACTACATCGAATTCAGATCAGGTTTCTGCGGATACATCAATGGAGGATAGGGATAATAGTTCACATGGTTTGTTGCCTCCTTCACCTTATATGAGAGTCAATTCTTCTAAGATGGGAGATTCTTTGCCTCCTCGTAAAGCACATAGGCGGTCTAGCAGTGATATCCCATTTGGATTATCTTCAATGATTCAGCCATCTTCTCTTCTCCCATTCAGTAGCTCTGGTGGAATGGAGCGATCAACAAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCTGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGCGAGAGGAAATCTGATGGGGACAGCGTGGACGACTTATTTTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCATGAGAATCGTGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGTGGGGATAGCGCTCAAATGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATCAAACGGACCGCAGGGGGAGATATTGCTCCGACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAATTTGGCGATGAGTCTCCCAAAATGCCTCCTACACCACCTGGCGTTCGTCCGGGGCAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCATTGACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACACTTTTACAGAGAGATTCAGTTGGGCTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAATTACGGGATGCTCTTAACGAAGCCTTAACCGCGGAAGTTCAGAGATTGAAACTCGCTACAACGGAGCTAAACGCGCAATCCCATCCCTCTAATGGAGTAATGCCCCAATCTTCCATCAATCACCATAGCCTCCAGCTTCAGCTTCAGCACCACCACCAACAACAGCAACAGATGCAGCAGAATGGGAGTGCAACCACAAAACCAGAATCCAACCAATAA | 1704 | 44.84 | MGDTEDANTENMRNLQCSYGVSSSSAGNLPFSMDQLKISQMNCSQIRPPHFQSNFLGDNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHGLLPPSPYMRVNSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSSLLPFSSSGGMERSTSSKENAGLLKPASQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMPQSSINHHSLQLQLQHHHQQQQQMQQNGSATTKPESNQ | 567 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 20041618 | 20044762 | + | Lsi11G011510.1 | Lsi11g01151 | 674318 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01151 | 567 | SUPERFAMILY | Leucine zipper domain | 422 | 473 | IPR046347 | GO:0003700|GO:0006355 | |
Lsi11g01151 | 567 | Pfam | bZIP transcription factor | 422 | 476 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 49 | 250 | - | - | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 289 | 320 | - | - | |
Lsi11g01151 | 567 | Gene3D | - | 421 | 473 | - | - | |
Lsi11g01151 | 567 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 76 | 562 | - | - | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 181 | 216 | - | - | |
Lsi11g01151 | 567 | PANTHER | ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED | 76 | 562 | - | - | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 68 | 82 | - | - | |
Lsi11g01151 | 567 | Coils | Coil | 501 | 521 | - | - | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 357 | 380 | - | - | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 228 | 250 | - | - | |
Lsi11g01151 | 567 | CDD | bZIP_plant_RF2 | 423 | 472 | IPR044759 | GO:0003700|GO:0006355 | |
Lsi11g01151 | 567 | Coils | Coil | 438 | 493 | - | - | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 49 | 67 | - | - | |
Lsi11g01151 | 567 | SMART | brlzneu | 418 | 482 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi11g01151 | 567 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 420 | 483 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 83 | 115 | - | - | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 539 | 567 | - | - | |
Lsi11g01151 | 567 | MobiDBLite | consensus disorder prediction | 268 | 343 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g01485 | Lsi-Chr10:18966125 | Lsi11g01151 | Lsi-Chr11:20041618 | 5.22E-52 | dispersed | |
Lsi11g01151 | Lsi-Chr11:20041618 | Lsi11g01421 | Lsi-Chr11:22748437 | 9.69E-21 | dispersed | |
Lsi11g01149 | Lsi-Chr11:20026140 | Lsi11g01151 | Lsi-Chr11:20041618 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26191 | PF00170 | bZIP_1 | 7.50E-09 | CL0018 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01151 | - | - | cpep:111776417 | 936.021 |