Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01162 ATGGCAATCAGACTACCTCGTGTTATGCATGTCAAGCAGATCTTTCGTCGAGTACCTCCAAATTCTGTCGAATCTTCCTCAGGATCGGACAATGTCACGAGAGGATATATTCCAGTCTATGTTGGAGAGGAACAAAAAAAGCGATATGTAGCACCGATATCTTACTTGAATGATCCATCATTTCAAAAGTTACTGAGTAAGGCAGAGGAAGAATTTGGATATGATCATCCTATGGGAGGCCTCACAATTCCCTGCAGAGACAAAGTGTTTGCTGATCTCACTTCTTGTTTAGTAGAGAATTGA 303 41.25 MAIRLPRVMHVKQIFRRVPPNSVESSSGSDNVTRGYIPVYVGEEQKKRYVAPISYLNDPSFQKLLSKAEEEFGYDHPMGGLTIPCRDKVFADLTSCLVEN 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20160190 20160492 - Lsi11G011620.1 Lsi11g01162 674329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01162 100 Pfam Auxin responsive protein 21 97 IPR003676 GO:0009733
Lsi11g01162 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 96 IPR003676 GO:0009733
Lsi11g01162 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 1 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01162 K14488 SAUR; SAUR family protein - jre:108986950 135.191
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00445 Lsi11g01162 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01160 Lsi-Chr11:20150496 Lsi11g01162 Lsi-Chr11:20160190 4.56E-16 dispersed
Lsi11g01162 Lsi-Chr11:20160190 Lsi11g01165 Lsi-Chr11:20167073 2.88E-37 dispersed
Lsi11g01161 Lsi-Chr11:20157289 Lsi11g01162 Lsi-Chr11:20160190 1.35E-34 tandem
Lsi11g01162 Lsi-Chr11:20160190 Lsi11g01163 Lsi-Chr11:20161653 4.21E-34 tandem
Lsi10g00433 Lsi-Chr10:6542586 Lsi11g01162 Lsi-Chr11:20160190 2.01E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g73 . . . . . . . . . . Cma02g00347 Cma20g00782 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00445 . Chy11g00313 Cme01g01305 . . . Bda14g00595 . . . . . Cmo02g00343 Cmo20g00787 . . . . . . Bhi10g01911 Tan05g1210 . . . . . . . . . . . . Lsi11g01162 Csa02g01332 . Cme11g00431
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018134 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01162 Lsi_Chr11 FPKM 7.028244 7.377695 10.441547 10.746284 41.611099 37.798489 45.063709 14.292101 13.200176 12.302999