Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01165 ATGGGTTTTCGTTTGCCTAGAATTGTTCAAGCTAAGCAAAGTCTTCGCCGGTCCTCATCAAATGGAAATGGAGCATCAACAGTTGACGTTCCAAAGGGGTACTTCACAGTTTATGTTGGTGAGGTACAAAAGAAGCGTTTCGTCATTCCACTATCTTACTTGAACCAACCTACTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATGATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAAGAATTTTTCATCGATCTCACTCGAAGTTTGAAAGACTCATGA 297 40.4 MGFRLPRIVQAKQSLRRSSSNGNGASTVDVPKGYFTVYVGEVQKKRFVIPLSYLNQPTFQDLLSQAEEEFGYDHPMGGITIPCSEEFFIDLTRSLKDS 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20167073 20167369 - Lsi11G011650.1 Lsi11g01165 674332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01165 98 Pfam Auxin responsive protein 13 94 IPR003676 GO:0009733
Lsi11g01165 98 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 10 94 IPR003676 GO:0009733
Lsi11g01165 98 PANTHER - 10 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01165 K14488 SAUR; SAUR family protein - cmos:111454983 173.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00455 Lsi11g01165 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00428 Lsi-Chr10:6515400 Lsi11g01165 Lsi-Chr11:20167073 1.48E-26 dispersed
Lsi11g01162 Lsi-Chr11:20160190 Lsi11g01165 Lsi-Chr11:20167073 2.88E-37 dispersed
Lsi11g01163 Lsi-Chr11:20161653 Lsi11g01165 Lsi-Chr11:20167073 1.13E-59 dispersed
Lsi11g01165 Lsi-Chr11:20167073 Lsi11g01173 Lsi-Chr11:20220217 9.14E-42 dispersed
Lsi11g01164 Lsi-Chr11:20164832 Lsi11g01165 Lsi-Chr11:20167073 1.48E-58 tandem
Lsi11g01165 Lsi-Chr11:20167073 Lsi11g01166 Lsi-Chr11:20175811 6.11E-53 tandem
Lsi10g00435 Lsi-Chr10:6560802 Lsi11g01165 Lsi-Chr11:20167073 7.54E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g80 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00464 Cam02g0470 Cec02g0470 . Clacu02g0473 Cmu02g0467 Cre02g0801 . . . . Lsi10g00455 . Chy11g00309 Cme01g01296 . . . . . . Bma03g00588 Bma08g00770 . Cmo02g00338 Cmo20g00780 . . . . . . . . . . . . . . . . . . . . Lsi11g01165 Csa02g01336 Chy01g00714 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01165 Lsi_Chr11 FPKM 17.344263 18.716345 15.585765 15.950926 38.302727 35.069347 38.480564 10.34448 12.111018 11.455243