Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01166 ATGGGGTTTCGTTTGCCTAGTATTGTTCATGCTAAGCCAAGTTTTCGACGATCTACATCGTCGGGAAATAGAGCCACTCCAAAGTCTCTTGATGTTCCAAAAGGATACTTTACGGTCTATGTCGGAGAAGGACAGAAGAAGCGTTTTGTCATTCCGCTATCTTACTTGAACCAACCTTTGTTTCATGATTTGTTGAGTCAAGCTGAAGAAGAATTTGGATACGATCATCCAATGGGTGGCATCACAATTCCCTGCAATGAAGATACATTTGTTAATCTTATTCATAGTTTAAATGACTCATGA 303 39.6 MGFRLPSIVHAKPSFRRSTSSGNRATPKSLDVPKGYFTVYVGEGQKKRFVIPLSYLNQPLFHDLLSQAEEEFGYDHPMGGITIPCNEDTFVNLIHSLNDS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20175811 20176113 - Lsi11G011660.1 Lsi11g01166 674333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01166 100 PANTHER - 11 96 - -
Lsi11g01166 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 96 IPR003676 GO:0009733
Lsi11g01166 100 Pfam Auxin responsive protein 16 96 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01166 K14488 SAUR; SAUR family protein - csv:116405103 182.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01164 Lsi-Chr11:20164832 Lsi11g01166 Lsi-Chr11:20175811 1.01E-56 dispersed
Lsi11g01166 Lsi-Chr11:20175811 Lsi11g01173 Lsi-Chr11:20220217 1.13E-37 dispersed
Lsi11g01165 Lsi-Chr11:20167073 Lsi11g01166 Lsi-Chr11:20175811 6.11E-53 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g81 . . . . . Bpe12g00104 . . Cmo19g00728 Cmo11g01713 . . . . . . . . . . . . . . Cla02g00458 Cam02g0466 Cec02g0465 . Clacu02g0468 Cmu02g0462 Cre02g0796 . . . . . Csa07g00063 . . . . Bda15g01052 . Bpe15g00833 . . . Sed01g0247 . . Cma11g01407 Cma19g00717 . . . . Bhi10g01907 Tan05g1206 Cmetu11g0253 . . . . . . . . . . . Lsi11g01166 Csa02g01342 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01166 Lsi_Chr11 FPKM 58.990089 60.714321 62.005093 60.985382 84.888512 96.884277 91.995705 50.942871 60.474045 55.783375