Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01167 ATGTGGCTACAAAAAGGACACAGTGTTAACTGCGTTAAGAAGGTAGGAGGAGCAGGCGGAGGGGGAAATGGGTTGGTTGCTATTGGTATAGACAGGGAAAAAGGAAGCCAAAATGCTCTCAGATGGGCCGCAGATCATTTGCTCGGAAAGGGTCAAACTGTGGTTTTAATCCATGTGGTTCAGAGACCTTCCAGTGCGGCTGCTTCTTTGATTGGGGAAGCCATTGTTTGTAATGGCGATGGTAATCTCACAGCTGATTCCCCTCATAGACAGCAGCTCGAGAAGCAGACTAGAGACATTTTTCTCACCTTCCATTGCTATTGTACCCGCAAGGACGGGAAGGTGTCATCGGTGAGAAATGCGTCTCGCTCAGCTCCCTTTGCTTCCCCTCTACAAGACCATTTACAGAAGATATCTAAGCCGATTGCAAAGGGAGCAATCACTCCTCAACATAAGTTTAATTTAAGAGACAGGACATCATTCAAGCCTCGCAGCTTTCCAGATGAACCAATCAAGTCACCTTTCTCTCATGGAGGAGAGAGAACTTCTATCTCAAAATGTAGTGGAGGGTTCTCTGAGTCAGAATCTGACATATCCTTTGTTAGCTCTGGCAGACCAAGCACGGATCGTACTTCTTCTATTGCATTTGACTACTCTGATTCAGCTCCCCCACGATTTTCAACCAGCTCAGAGCATAGCTTTGCATCTCTACCATTTAAACCAAAATGGACAGACCTCAGTAATCTCAATGATTTCTCATCAGTTTCAGATGAGAGCTGCAGGACATCATGTTCCTGGTCATCTCAGAACTTGGATGAAGCAGAACTTGAAATGAGGAGGCTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACAGCAAAGCAGAAGGCAATGGAACTAAATAATTGGAGACGTGAAGAAGAACAAAAACTAGAAGAGGCACGACTTGCACAAGAAGCAGCAATGGCTATTGCAGAGCAGGAGCGAGCAAGATGCAGAGCGGCAATGGAAGCAGCTGATGCAGCTAAGAGAATTGCAGAGTTAGAATCACATAAAAGAGCAAATCTAGAGATTAAGGCACTTAAAGAAGCAGAGGACATGCAGAGAGCATTGAAAAATCTTGCACAAAGCGACATCAGATACAGGAGATATTCAATTGAGGAGGTTGAATCGGCAACGGAACATTTTTCACAATCTCGGAAGATTGGGGAAGGAGGTTATGGACCTGTCTTTCGATGTCGTCTTGATCAAACATCGGTTGCAGTCAAGGTTTTGCGCCCTGATGCATCTCAAGGAAGGACACAGTTTCAGCAAGAGATTGATATATTGAGTTGCGTAAGGCATCCCAACATGGTACTTCTTCTAGGAGCATGCCCTGAATATGGCATTCTAGTGTATGAATACATGTCCAATGGAAGTTTGGAGGATCGACTCTTTCGAGAGGGGAACACCCCTGTTATTCCTTGGCAATTGAGGTTTCGAATTGCTGCCGAGATTGCTACTGGCCTTCTGTTTCTCCACCAGACAAAGCCAGAGCCACTGGTGCACCGTGACCTCAAGCCAGCTAACATATTGCTGGACCACAACTATGTTTGCAAGATAAGTGATGTCGGTTTGGCTAGACTGGTACCTGCTGTGGCCGAAAATGTAACACAATGCTACATGACTTCGGCCGCTGGAACTTTCTGCTACATAGACCCTGAGTATCAACAAACTGGAATGCTTGGGGTTAAATCTGATGTGTATTCACTAGGTATCATGTTGCTTCAACTAATTACAGCCAAGCCTCCCATGGGGTTGGCTCACCATGTCGCTCGCTCTATTGAGAAGGGGACTTTTCAGGAGCTTCTGGACCCAGCTGTGGTTGATTGGCCAGTGGAACAAGCACTTTGCTTTGCAAAATTAGCACTTCAATGTGCAGAACTTAGACGAAAAGACAGACCAGATCTTGGCAATGTTGTGTTACCAGAACTTAACAAATTGAGAGAATTTGGTGAAGAGAAAATCGAGCACATGGTGTCAAGGGATAGTAGTGAATCTTTGAGCGGTTTTAGCCATGCCTCAAGGGATCAGGATGTAATGAGCGACCCACAATTAGAGATGATTTCAGAAAATTCCAAGAGCCAATCTAGTGAATCATCACATGGAGGAGAATGA 2184 45.01 MWLQKGHSVNCVKKVGGAGGGGNGLVAIGIDREKGSQNALRWAADHLLGKGQTVVLIHVVQRPSSAAASLIGEAIVCNGDGNLTADSPHRQQLEKQTRDIFLTFHCYCTRKDGKVSSVRNASRSAPFASPLQDHLQKISKPIAKGAITPQHKFNLRDRTSFKPRSFPDEPIKSPFSHGGERTSISKCSGGFSESESDISFVSSGRPSTDRTSSIAFDYSDSAPPRFSTSSEHSFASLPFKPKWTDLSNLNDFSSVSDESCRTSCSWSSQNLDEAELEMRRLKLELKQTMEMYSTACKEALTAKQKAMELNNWRREEEQKLEEARLAQEAAMAIAEQERARCRAAMEAADAAKRIAELESHKRANLEIKALKEAEDMQRALKNLAQSDIRYRRYSIEEVESATEHFSQSRKIGEGGYGPVFRCRLDQTSVAVKVLRPDASQGRTQFQQEIDILSCVRHPNMVLLLGACPEYGILVYEYMSNGSLEDRLFREGNTPVIPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVCKISDVGLARLVPAVAENVTQCYMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPPMGLAHHVARSIEKGTFQELLDPAVVDWPVEQALCFAKLALQCAELRRKDRPDLGNVVLPELNKLREFGEEKIEHMVSRDSSESLSGFSHASRDQDVMSDPQLEMISENSKSQSSESSHGGE 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20180516 20186593 - Lsi11G011670.1 Lsi11g01167 674334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01167 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Lsi11g01167 727 MobiDBLite consensus disorder prediction 685 727 - -
Lsi11g01167 727 Coils Coil 271 291 - -
Lsi11g01167 727 Gene3D Phosphorylase Kinase; domain 1 372 477 - -
Lsi11g01167 727 Coils Coil 309 337 - -
Lsi11g01167 727 CDD STK_N 25 118 - -
Lsi11g01167 727 PANTHER OS02G0152300 PROTEIN 112 724 - -
Lsi11g01167 727 PANTHER OS02G0152300 PROTEIN 22 112 - -
Lsi11g01167 727 MobiDBLite consensus disorder prediction 159 192 - -
Lsi11g01167 727 ProSiteProfiles Protein kinase domain profile. 405 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01167 727 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 112 724 - -
Lsi11g01167 727 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 22 112 - -
Lsi11g01167 727 Gene3D Transferase(Phosphotransferase) domain 1 478 690 - -
Lsi11g01167 727 MobiDBLite consensus disorder prediction 178 192 - -
Lsi11g01167 727 MobiDBLite consensus disorder prediction 681 727 - -
Lsi11g01167 727 Pfam Protein kinase domain 406 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01167 727 Gene3D HUPs 25 133 IPR014729 -
Lsi11g01167 727 SMART serkin_6 405 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01167 727 SUPERFAMILY Protein kinase-like (PK-like) 387 663 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00856 Lsi-Chr8:16978567 Lsi11g01167 Lsi-Chr11:20180516 0 dispersed
Lsi08g01117 Lsi-Chr8:19813869 Lsi11g01167 Lsi-Chr11:20180516 6.66E-19 dispersed
Lsi09g00480 Lsi-Chr9:5047100 Lsi11g01167 Lsi-Chr11:20180516 2.86E-111 dispersed
Lsi11g00823 Lsi-Chr11:10203339 Lsi11g01167 Lsi-Chr11:20180516 0 dispersed
Lsi11g01167 Lsi-Chr11:20180516 Lsi10g01375 Lsi-Chr10:17894271 1.41E-70 dispersed
Lsi11g01167 Lsi-Chr11:20180516 Lsi04g02207 Lsi-Chr4:29113287 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84043 PF00069 Pkinase 1.10E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01167 - - csv:101202855 1019.99