Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01171 ATGGGTATTCGTCTACCTGGTGTTGTTAATGCCAAACAGATTCTCCAATGGATTCATCGCAGTTCAGATGCGATTCCGAAAGGCCACTTGGCTGTTTATGTTGGAGAAGCACAGAGGAGGCGCTTTGTTGTACCAGTTTCTTACTTGAGTCATCCTTCTTTTCAGACATTGTTGAGTCAAGCTGAAGAGGAGTTCGGTTTCCATCATCCCATGGGAGGTCTCACAATTCCATGTAGAGAAGAAGCTTTCCTTAATCTCACTCGAAGTTTGAATCTCTCATGA 282 43.97 MGIRLPGVVNAKQILQWIHRSSDAIPKGHLAVYVGEAQRRRFVVPVSYLSHPSFQTLLSQAEEEFGFHHPMGGLTIPCREEAFLNLTRSLNLS 93
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20204770 20205051 + Lsi11G011710.1 Lsi11g01171 674338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01171 93 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 91 IPR003676 GO:0009733
Lsi11g01171 93 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 1 91 - -
Lsi11g01171 93 Pfam Auxin responsive protein 17 89 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01171 K14488 SAUR; SAUR family protein - csv:101204067 166.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01171 Lsi-Chr11:20204770 Lsi10g00456 Lsi-Chr10:6633304 8.43E-41 dispersed
Lsi11g01171 Lsi-Chr11:20204770 Lsi11g01173 Lsi-Chr11:20220217 2.32E-37 proximal
Lsi11g01171 Lsi-Chr11:20204770 Lsi11g01172 Lsi-Chr11:20209341 1.20E-25 tandem
Lsi10g00455 Lsi-Chr10:6630491 Lsi11g01171 Lsi-Chr11:20204770 2.09E-40 wgd
Lsi10g00447 Lsi-Chr10:6609877 Lsi11g01171 Lsi-Chr11:20204770 2.24E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g82 . . . . . Bpe12g00105 . . . Cmo11g01714 Cma02g00343 Cma20g00778 . . . . . . . . . . . . Cla02g00454 Cam02g0461 Cec02g0461 . Clacu02g0463 Cmu02g0457 Cre02g0791 . . . . . . Chy11g00307 Cme01g01295 . Blo13g00528 . . . . . Bma08g00769 Sed01g0241 Cmo02g00335 Cmo20g00777 . . . . . . Bhi10g01906 Tan05g1205 Cmetu11g2080 . . . . . . . . . . . Lsi11g01171 Csa02g01344 Chy01g00707 Cme11g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01171 Lsi_Chr11 FPKM 0.0 0.0 0.0 0.368487 0.0 0.0 0.0 0.0 0.0 0.0