Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01177 ATGGTTCTTTCCAAGGAAATTCCGAGCTCTGCAGAGGAATATTTGGGTTCTCAGACTCACAGCAAGCTCCCAATTTCATCTATTCTCATCATAATCGCTATGCAGACGGAAGCGCTTCCTTTGGTGGAGAAGTTTCAACTTTCCGAAGATAAAAAATCTTTGTTTCCAAAGGAGGTTCCGTGGGTTCGTTATCATGGGATTTACAGAAATCTTCAAATCAATTTGATTTGGCCTGGAAAGGATTCAGCCTTGGGAGTTGATAGTGTGGGCACGATTTCTGCATCGCTTGTAACCTACGCTTCGATCCAAGCATTGCACCCAGACCTTATCATAAATGCAGGCACTGCTGGTGGTTTTAAGGCGAAAGGAGCTAGCATTGGTGATGTGTTTCTGGTATCCGAGTGTGCCTTCCATGATAGACGTATACCTATTCCAGTTTTCGATTTATATGGAGTCGGATTGAAGCAAGCACTGAAAACACCCAATCTCCATAAGGAACTCGACCTAAAGGTTGGCAAATTATCAACTGGTGACTCGTTGGACATGTCTGCGCAGGATGAAGCATCGATTGTAGCTAACGATGCCACGGTTAAAGATATGGAGGTAAAAGTTGAAGTGTTGGTGCAGCAACCTGGAGGAGCAGCAATAGCCTATGTGGCTGATATATTCAAAGTTCCTGCAATATTTGTAAAAGCTGTCACCGATATTGTCGATGGCGAAAAACCAACTGCAGAAGAATTCTTGCAAAATTTAGCTACAGTTTCTGCTGCACTGGATCTAGCAGTTACACAAGTTATAGATTTCATCAGTGGAAAGTGCATTCATGAACTTTGA 834 42.93 MVLSKEIPSSAEEYLGSQTHSKLPISSILIIIAMQTEALPLVEKFQLSEDKKSLFPKEVPWVRYHGIYRNLQINLIWPGKDSALGVDSVGTISASLVTYASIQALHPDLIINAGTAGGFKAKGASIGDVFLVSECAFHDRRIPIPVFDLYGVGLKQALKTPNLHKELDLKVGKLSTGDSLDMSAQDEASIVANDATVKDMEVKVEVLVQQPGGAAIAYVADIFKVPAIFVKAVTDIVDGEKPTAEEFLQNLATVSAALDLAVTQVIDFISGKCIHEL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20255572 20259474 - Lsi11G011770.1 Lsi11g01177 674344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01177 277 CDD MTAN 33 262 - -
Lsi11g01177 277 PANTHER 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE 1 21 277 IPR044580 GO:0008930|GO:0019509
Lsi11g01177 277 SUPERFAMILY Purine and uridine phosphorylases 28 257 IPR035994 GO:0003824|GO:0009116
Lsi11g01177 277 Gene3D Nucleoside phosphorylase domain 22 277 IPR035994 GO:0003824|GO:0009116
Lsi11g01177 277 Pfam Phosphorylase superfamily 28 264 IPR000845 GO:0003824|GO:0009116
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01177 K01244 MTN; 5'-methylthioadenosine nucleosidase [EC:3.2.2.16] - csv:101204791 461.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g93 . . . . . . . . Cmo19g00731 Cmo11g01721 . . . . . . . . . . . . . . . . . . . . . Cone12ag1206 Cone8ag1258 . . . . . . . . Bda15g01046 . . . Bma03g00590 . . . . Cma11g01400 Cma19g00722 . Car19g00549 . . . . . . . . . . . . . . . . Lsi11g01177 . Chy01g00700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012224 2 1 1 1 0 1 2 1 1 1 0 1 2 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01177 Lsi_Chr11 FPKM 20.520597 22.422493 26.787062 28.352234 29.676197 27.507381 31.220087 35.161224 32.279259 35.02272