Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01179 ATGTCGAATTCCTCTTCGAACTTGCCCCAGAATGGGAATGTTAAAAACAATGATGCCTTATTCCCTGTGGATGAGATTGAAGAAAGTGAGTTTTCGAAGCTATTGGATAGGCCAAGGCCGTTGAACATGGAGAGACAGAGGTCATTTGATGAAAGATCGCTTGGGGATTTGGCGATTGGTTTTTCCCCACGGCTATCGACGAGAGTTTCTTCAGAGAACTTTAGTCGATTGACTGATAATTATGATCAAACTCCATCCCCTGGCAGAAAATCGGATTTCAATACTCCAAGATCACAGACTGGATTCGAGCAGCATCCTATGGTGGCCGAAGCTTGGGAAGCTTTGAGGCGTTCGTTGGTCCATTTCCGTGGCCAACCAGTTGGTACAATTGCTGCGTTGGACAGTACTGAAGAAAATCTTAATTATGATCAAGTGTTTGTGAGAGACTTTGTCCCAAGCGCATTTGCTTTTCTAATGAATGGGGAGCCTGAAATAGTAAAAAACTTTATCTTAAAAACTCTTCGGCTTCAGTCATGGGAGAAAAAGATTGACAGATTCCAGCTTGGAGAAGGGGTGATGCCTGCTAGTTTCAAAGTGCTTCACGATCCAGTGAGGAACACTGAAACTTTAATTGCAGATTTTGGAGAGAGTGCAATAGGAAGAGTTGCTCCAGTTGACTCTGGATTTTGGTGGATTATATTGCTTAGAGCATACACAAAGTCCACTGGTGACACCTCCTTGGCTGAACTGCCAGAATGCCAAAAGGGAATGCGCCTTATTTTGAGTCTGTGTCTTTCAGAAGGGTTTGATACATTCCCAACCCTTCTCTGTGCCGATGGATGCTGCATGATTGATAGACGAATGGTGCGCTTGACTTCTGAAATTCACTCCGGAGACGGTTTGCTTAACAAACTGAGCTGTATGCACTGTGCAGTCTTGAATCATGATCATCATCCATTCATTTCTTATTTCTTACTGCTTTTATTATTGGGTGTATATGGCTACCCAATTGAAATTCAAGCTCTTTTCTTTATGGCTTTAAGGTGTGCTTTGCTTTTACTTAAGCAAGACCACGAGGGGAAGGACTTTGTAGAAAGAATAACAAAACGGCTTCACGCCTTGAGCTATCACATGAGAACTTACTTTTGGCTCGACCTAAAGCAACTAAATGATATATACCGATACAAAACTGAAGAATACTCTCACACTGCTTTGAACAAGTTCAATGTAATACCCGATTCTCTTCCTGAATGGATTTTTGACTTTATGCCAACTCGTGGTGGTTACTTTATCGGAAATGTCAGCCCTGCAAGAATGGACTTCCGTTGGTTTTGCTTAGGCAACTGCATTGCAATTCTTTCTGCCTTGGCAACACCAGAACAGTCCACTGCTATTATGGATCTTATTGAATCGCGTTGGGAAGAGCTGGTCGGAGAAATGCCTCTAAAGGTTTGTTACCCTGCCATTGAAAGCCACGAGTGGCGGATTGTAACTGGGTGTGATCCAAAAAATACAAGATGGAGTTACCATAATGGTGGTTCTTGGCCTGGTAGTTTATACGTTCGTAGTTTGGTTTCCATTTGTTCCCATTTATATGACTTGAGTATGAGACTTAGTCCTAATGACAAAGTAGATTTTACTTATTCTGCATTGCACAAGAACCGAGATATTGACATTGCTGCAATTCTTGCAGTTCTCCTATGGCTTCTAACAGCTGCATGTATCAAGACGGGGCGACCCCAGATTGCGAGACGTGCACTCGAACTGGCTGAAACCAGGCTATTGAAAGACAACTGGCCAGAATATTATGATGGGACAGTTGGGCGGTACATTGGGAAACAGGCACGAAAGTTTCAGACGTGGTCGATTGCAGGTTATTTAGTGGCAAAGATGATGCTGGAAGACCCCTCTCATTCAGGCATGGTGTCCCTGGAGGAAGACAAGCAGATGAAGCCTGTAATGAAAAGAGTAAAAGTAAAGGGAAAAATTATG 1992 42.97 MSNSSSNLPQNGNVKNNDALFPVDEIEESEFSKLLDRPRPLNMERQRSFDERSLGDLAIGFSPRLSTRVSSENFSRLTDNYDQTPSPGRKSDFNTPRSQTGFEQHPMVAEAWEALRRSLVHFRGQPVGTIAALDSTEENLNYDQVFVRDFVPSAFAFLMNGEPEIVKNFILKTLRLQSWEKKIDRFQLGEGVMPASFKVLHDPVRNTETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDTSLAELPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMVRLTSEIHSGDGLLNKLSCMHCAVLNHDHHPFISYFLLLLLLGVYGYPIEIQALFFMALRCALLLLKQDHEGKDFVERITKRLHALSYHMRTYFWLDLKQLNDIYRYKTEEYSHTALNKFNVIPDSLPEWIFDFMPTRGGYFIGNVSPARMDFRWFCLGNCIAILSALATPEQSTAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPGSLYVRSLVSICSHLYDLSMRLSPNDKVDFTYSALHKNRDIDIAAILAVLLWLLTAACIKTGRPQIARRALELAETRLLKDNWPEYYDGTVGRYIGKQARKFQTWSIAGYLVAKMMLEDPSHSGMVSLEEDKQMKPVMKRVKVKGKIM 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20272599 20277224 - Lsi11G011790.1 Lsi11g01179 674346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01179 664 Gene3D - 135 518 IPR012341 GO:0005975
Lsi11g01179 664 MobiDBLite consensus disorder prediction 1 21 - -
Lsi11g01179 664 MobiDBLite consensus disorder prediction 76 100 - -
Lsi11g01179 664 SUPERFAMILY Six-hairpin glycosidases 117 629 IPR008928 GO:0005975
Lsi11g01179 664 Pfam Alkaline and neutral invertase 564 636 IPR024746 GO:0033926
Lsi11g01179 664 Pfam Alkaline and neutral invertase 111 288 IPR024746 GO:0033926
Lsi11g01179 664 Pfam Alkaline and neutral invertase 330 524 IPR024746 GO:0033926
Lsi11g01179 664 PANTHER ALKALINE/NEUTRAL INVERTASE B-RELATED 1 289 - -
Lsi11g01179 664 PANTHER - 564 657 IPR024746 GO:0033926
Lsi11g01179 664 PANTHER - 330 526 IPR024746 GO:0033926
Lsi11g01179 664 MobiDBLite consensus disorder prediction 1 17 - -
Lsi11g01179 664 PANTHER - 1 289 IPR024746 GO:0033926
Lsi11g01179 664 PANTHER ALKALINE/NEUTRAL INVERTASE B-RELATED 564 657 - -
Lsi11g01179 664 PANTHER ALKALINE/NEUTRAL INVERTASE B-RELATED 330 526 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01179 - - - csv:101204549 1088.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01980 Lsi-Chr2:25687446 Lsi11g01179 Lsi-Chr11:20272599 0 dispersed
Lsi11g00650 Lsi-Chr11:6843471 Lsi11g01179 Lsi-Chr11:20272599 2.20E-176 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g97 . . Bda06g00969 . . . . Bma12g00525 . Cmo11g01723 . . . . . Cpe04g00574 . Bhi05g01747 . . . . . . Cla02g00449 Cam02g0456 Cec02g0455 Cco02g0474 Clacu02g0457 Cmu02g0452 Cre02g0786 Cone12ag1209 Cone8ag1261 . . . Csa07g00078 . Cme01g01286 . . . . . . . . . . . Cma11g01397 . . . . . . . . . . . . . . . . . . . Lsi11g01179 . Chy01g00699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01179 Lsi_Chr11 FPKM 13.789707 15.655615 12.586015 11.564583 15.757331 12.924349 15.729848 15.670509 17.569521 16.747892