Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01181 ATGCATGCTGCCACATCTCAATCGGATTCGGATGCCGGATCATCTGAGGCTGTTGAAGAAGTTAGCGATCTTGGAATTGTGGGTGAAGAAGATTCTCAGGATTTTGGAGAAGTGAACTTCGGTCCTGCTCCAGGAGTTGATACTGTCTGCGTTTTTCCAAAAAATAGTGCACGCATAGTGCCAGCTGGTGAAGAGACTGAACTACTCGCGGGAGTGAAAAATGATGGGGAATCAAGCTTGAATATTATAGCTATTAAGGCCAGCATTCATTACACTTTTGATCATCGTCTGTTGATTCAAAATCTTACTGGACAGGTGTTCCACAATGCAACAGTGCTCCCATCAACCCAAGCTACTTACCCATATGTATTTGCTGTCAGCAAATTTTTGCAGTTCCTTGCCTCACAATATGAATTTTCAGTTTACAGAACTACTAACCTGCTTATCTTGATCAATTTTGAACCCGGAAATTTTGATCTAGTGGGTACCATCTTTTATGAAATAGACCAGAATGCATACCAAAGCATCTTCTATAACGGTACTATTGAAGTCGTTGAAGCTAGTGGTATCATCAGCATTGAGTCTGTGTTTCTAGTTACTCTTGCAATTGCCCTTCTCGTTCTGCTTGGCTTATGGATTCATGGTCAAATACAGCAAAAACTCTCCAAGAAACCCAAGAGGGCTGCTTCCAAGGTTGAAGTTGGAACAAAAACCGTTGATACCTCAATGGATGAATGGCTTCAGATTTTATCGAGTATCTCGATGTCGGGTGAAGTATCTCGATGTCGGGTGACTGCGATTACTGTAGAAAATGATTGGGAGGATTTGGATGTCATTTGTTCCATGATTTGTGACATACTTGACTTTGACTTGACAACAGTTGAGGTTGTTGGGGTTGGAGAATGTGCAGACTGCTACAAGAATAACATTAAAACCAATCATGCCTTCTCAGGGCTTAGTGTAAGCATTGAGTGCAAACAAAAAGATGGAAACATTGAAAGAAAAGGGGTTGCAAAGCTAGATGAAGAAGGAAAGTTCAAAGTGTTACTTCCAACTGACGTTTTGAAAGATGGAAAGTTGAAGGGAAAGTGCTTTGCACAACTTCACAGTGCTTCTTCTACTCCTTGTCCTTCCCATGATGGCTTGGAAATGGCTTCCATGATTGTATTCAAATCCAAAGATGAGGGAAAACAAACATTTGGTTTGCCTAGTGGGCTCAAATTCAAGAGTTCAACTTGTGTTTCTGCTTTCTTTTGGCATCATTATTATCATCACCCTCCTTTGCCTCCAATCTCTTTACCTGTCTTCCCTCCTCATCCTCCATTGTTTAAACATCCCTATTTGTTTCCTCCTTACCATCACAAGCTCTTCCCTCCTAAAGTCTACACTCCTCCGCCCACTCCCGAACAACCGCTACCCCCACCTGTCCCCGAAAAGCCTCCACCCGTCTATGAGAAGCCCCCACCTGTCCCCGAAAAACCTCCACCGGTCTACAAGAAGCCTCCGCCCGTTTACGAGAAGTCTCCGCCTGTTTATGTAAAGCCTCTTCCTCCACCAGTACCAGTTTACAAGGCGAAACCGCCTCCGGTTTACAAGCCGAAGCCGCCGGTTTACAAGCCTCCAGCACCAAAGAAGCCATTGTCTCCTCCATCACCAGTTTACTATAAGCATCCATGGTATAAGATTCTCCCTCCAATTTCAAAGCTTCCTCCATGTCCACCAGTTCCAAAGGTTATACCTGTTGTTGTTCCAGCTCCAAAGTACTACTCTCACCCAAAGTTTGGCAAGAAATTTCCTCCTCTGTCTCCTTCTGTTCCACATCCTAATTAG 1830 43.72 MHAATSQSDSDAGSSEAVEEVSDLGIVGEEDSQDFGEVNFGPAPGVDTVCVFPKNSARIVPAGEETELLAGVKNDGESSLNIIAIKASIHYTFDHRLLIQNLTGQVFHNATVLPSTQATYPYVFAVSKFLQFLASQYEFSVYRTTNLLILINFEPGNFDLVGTIFYEIDQNAYQSIFYNGTIEVVEASGIISIESVFLVTLAIALLVLLGLWIHGQIQQKLSKKPKRAASKVEVGTKTVDTSMDEWLQILSSISMSGEVSRCRVTAITVENDWEDLDVICSMICDILDFDLTTVEVVGVGECADCYKNNIKTNHAFSGLSVSIECKQKDGNIERKGVAKLDEEGKFKVLLPTDVLKDGKLKGKCFAQLHSASSTPCPSHDGLEMASMIVFKSKDEGKQTFGLPSGLKFKSSTCVSAFFWHHYYHHPPLPPISLPVFPPHPPLFKHPYLFPPYHHKLFPPKVYTPPPTPEQPLPPPVPEKPPPVYEKPPPVPEKPPPVYKKPPPVYEKSPPVYVKPLPPPVPVYKAKPPPVYKPKPPVYKPPAPKKPLSPPSPVYYKHPWYKILPPISKLPPCPPVPKVIPVVVPAPKYYSHPKFGKKFPPLSPSVPHPN 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20293345 20302048 + Lsi11G011810.1 Lsi11g01181 674348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01181 609 Pfam Pollen protein Ole e 1 like 296 378 - -
Lsi11g01181 609 PANTHER - 153 249 - -
Lsi11g01181 609 PANTHER - 2 131 - -
Lsi11g01181 609 MobiDBLite consensus disorder prediction 1 15 - -
Lsi11g01181 609 Pfam Translocon-associated protein (TRAP), alpha subunit 16 128 IPR005595 GO:0005789
Lsi11g01181 609 Pfam Translocon-associated protein (TRAP), alpha subunit 167 247 IPR005595 GO:0005789
Lsi11g01181 609 PANTHER TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT 153 249 - -
Lsi11g01181 609 PANTHER TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT 2 131 - -
Lsi11g01181 609 MobiDBLite consensus disorder prediction 1 22 - -
Lsi11g01181 609 MobiDBLite consensus disorder prediction 463 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01181 K13249 SSR1; translocon-associated protein subunit alpha - csv:101205278 391.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00465 Lsi-Chr10:6737001 Lsi11g01181 Lsi-Chr11:20293345 6.01E-50 transposed
Lsi10g00464 Lsi-Chr10:6718804 Lsi11g01181 Lsi-Chr11:20293345 1.99E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g114 . . Bda06g00966 . Bpe07g00486 . . . . Cmo11g01725 Cma02g00326 Cma20g00768 Car02g00207 Car20g00671 Sed05g2235 Cpe04g00577 . Bhi05g01744 Tan02g0711 Cmetu01g1502 . . . . Cla02g00445 Cam02g0454 Cec02g0452 Cco02g0471 Clacu02g0455 Cmu02g0450 Cre02g0783 . Cone8ag1266 . . . . Chy11g00292 Cme01g01283 Blo04g00553 . . Bda14g00602 . . Bma03g00593 . Sed05g3586 Cmo02g00321 Cmo20g00767 Cma11g01394 . . . . . Bhi10g01887 Tan05g1183 Cmetu11g2155 . Hepe08g0942 . . Cla02g01110 Cam02g1182 . . Clacu02g1172 Cmu02g1132 . Lsi11g01181 . Chy01g00696 Cme11g00414
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001891 0 2 1 3 2 2 3 3 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 1 2 5 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01181 Lsi_Chr11 FPKM 4.308943 6.939087 6.040149 4.625834 5.496662 6.567636 5.62581 5.933808 6.432283 6.101176