Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01184 ATGCCGGCAATGGTTTCTCCATGGGGAAAACCAGGCGCTTGGGCCCTCGATTCCGAGGAACACGAAGCTCAACTCCTTAAGGAAGAGGAACTGCAGAAACGAGCGGAACGCAGCCTGGATTTTCCTTCCCTCAACGATGCCTTGGCCACCAAGCCGAAGAAGAAAGGGCAAACTCTCTCATTGGCTGAGTTCAACGCCTTTGGAAGTACCGGGTCGAGATCTTCTTCGCAAGGCCTCAAGCATGAGGATTTGATTGTACTGCCCACTGGCCCTCGCCAACGGACGGCGGAGGAGCTCGACCGGAACAGGCTCGGTGGTGGATTCAGGAATTATGGTTCGAATGGTTCGTATGAGAGGAATAATAGGTATTCTAATGGGGATGATTCGTCTAATTCGAAGTGGGGTTCGTCTAGGGTTTCTGATGAGAATCGGAGGAATAGTAATGGGTCTAATAGAGTGGATTCGAGTAAGGAATTTACATCTTCTAGGGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAACCTATGGCTGCAAATGGATTTGAGAGGAGGGAGAGAGGAGTAGGGTTTTCGGATTCGCAATCTTCAAAAGCCGACGAATCAGAGAGTTGGGTTTCTAATAAGAGCAATATTCCGTCGGATGGGAGGAGATTTGACAGAGAGCGACGAGGAGGGTTCACGGCGAGCGGCGGCGGGGCAGATTCAGACAATTGGGGGAGGAAGAAAGAGGAAGGTAATACTGGTGGCATCATTGGTGGTCGGCCAAAGCTTAATCTGCAGCCACGGACGCTGCCGGTTAGCGACGGGAAATCGTCGGAGATATCAGGGACGGCGGCGAGGTCCAAGAGTTCGAACCCATTTGGAGCGGCGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAGGGACATGACTGGAAAAAGCTTGACGAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCAGTGGAGGAGAAGACAGAAAAATCCAACGTCATTTCCTTTGGAAAAAAGAGCTTTAACAATGGAAATAGGCGGGTTACTGAGGATAGAACAGAGAGGAGCTGGAGGAAGCCGGAGACACCGCCGCAGGAGTCACCGGAATCTCTTCCCGACAGTGGGGAGGAAAATGAAAATGGAGACTGCGAAGGCGAACTCAAAGAGGACGAAAATGGAGCTTGA 1176 51.19 MPAMVSPWGKPGAWALDSEEHEAQLLKEEELQKRAERSLDFPSLNDALATKPKKKGQTLSLAEFNAFGSTGSRSSSQGLKHEDLIVLPTGPRQRTAEELDRNRLGGGFRNYGSNGSYERNNRYSNGDDSSNSKWGSSRVSDENRRNSNGSNRVDSSKEFTSSRADEVDNWALTKKPMAANGFERRERGVGFSDSQSSKADESESWVSNKSNIPSDGRRFDRERRGGFTASGGGADSDNWGRKKEEGNTGGIIGGRPKLNLQPRTLPVSDGKSSEISGTAARSKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNVISFGKKSFNNGNRRVTEDRTERSWRKPETPPQESPESLPDSGEENENGDCEGELKEDENGA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20325688 20327252 + Lsi11G011840.1 Lsi11g01184 674351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01184 391 Coils Coil 16 38 - -
Lsi11g01184 391 Pfam Plant specific eukaryotic initiation factor 4B 4 316 IPR010433 GO:0003743
Lsi11g01184 391 MobiDBLite consensus disorder prediction 294 330 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 67 391 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 369 383 - -
Lsi11g01184 391 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 362 IPR010433 GO:0003743
Lsi11g01184 391 MobiDBLite consensus disorder prediction 192 213 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 113 157 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 265 285 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 341 359 - -
Lsi11g01184 391 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 1 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01184 - - - bhj:120077882 674.085
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00469 Lsi11g01184 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01639 Lsi-Chr8:24272409 Lsi11g01184 Lsi-Chr11:20325688 4.31E-48 transposed
Lsi11g00933 Lsi-Chr11:13387510 Lsi11g01184 Lsi-Chr11:20325688 6.99E-86 transposed
Lsi10g00469 Lsi-Chr10:6804811 Lsi11g01184 Lsi-Chr11:20325688 2.10E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g120 . . . . . Bpe12g00111 . . . Cmo11g01728 Cma02g00325 Cma20g00766 Car02g00205 Car20g00670 Sed05g2231 Cpe04g00580 . Bhi05g01738 Tan02g0706 Cmetu01g1657 . . . . Cla02g00442 Cam02g0451 . . . . . . . . . Lsi10g00469 Csa07g00084 Chy11g00288 Cme01g01280 Blo04g00556 . Bda15g01044 Bda14g00605 Bpe15g00825 . Bma03g00596 Bma08g00764 Sed01g0218 Cmo02g00319 Cmo20g00764 . . . . Cpe16g00301 Cpe05g01315 Bhi10g01883 Tan05g1181 Cmetu11g0510 . Hepe08g0267 . . Cla02g01138 Cam02g1214 Cec02g1222 Cco02g1266 Clacu02g1196 Cmu02g1165 Cre02g1472 Lsi11g01184 Csa02g01360 Chy01g00694 Cme11g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002647 4 3 1 2 2 2 3 1 1 2 2 1 2 2 2 3 1 0 3 1 2 1 1 2 1 2 1 6 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01184 Lsi_Chr11 FPKM 61.251472 67.459969 17.445644 18.382797 37.158939 33.464317 37.227669 3.648352 4.413351 3.493157