Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01185 ATGGAACCTTTCTCTTACAAAATCCGAACACTGTCCCATCCAATCTCCGACCAAACGCCTCCACCGCCTCCACCGGCCGCCACCTCACCCTCCGAAAGAATGAACATCGTCTTCTTCCTCTCAGCTTTCTTACTCTTCACTGGCGGCGCCAACTCCTCCGACTTCCCCATCGAGGAAGCCACCATCGCCGAAATCCAAAATGCCTTTTCCCAAAACAAACTCACCTCCACACAACTTCTCGATCATTACCTCAACAAGATCCACTTCCTCAATCCAGTCCTCAAAAGCGTTCTCGAAGTCAACCCAGATGCAAGAGCTCAAGCGGAAGCCGCCGATCGAGAGAGGCTCCTCGCCGGAGGAAAAGCCCTAGGCGAACTCCATGGCATTCCAGTTCTGCTCAAGGACGCCATTGCTACCAAGGATCGCCTCAATACCACCGCCGGATCTTTCGCGTTGCTGGGTTCGGTGGTGCCTCGAGATGCGACGGTGGCTAGTCGCCTGAGGAACGCCGGCGCGGTGATTTTGGGGAAAACTTCACTTACAGAGTGGTATGGGTCTCGTTCTTGGAATCTTCCCAATGGATGGTGTGCTCGTGGCGGTCAAGCGCTGAACCCATATGGAAAAGGAGGCGATCCATGTGGGTCAAGCAGTGGGTCTGCAATATCGGTGGCGGCGAACATGGCGGCGGTCTCTCTGGGGACGGAAACTGATGGGTCAATTCTGTGTCCGGCCGATTACAACTCGGTGGTTGGCATCAAACCCACCGTCGGTCTCACGAGCCGGGCCGGCGTTATCCCTATCTCTCCTCGCCAAGACACAATTGGTGGTGAATTCATTACAATGATAGCTGAGTTCAAGCTGACCATAAACGATTACCTTAAGAAACTGATTCAAAGTCCAGTTAGATCTCTGGCTGACATTATTGCCTTCAACAACAACCACGCCGAACTGGAGAACATGATAGAGTATGGCCAAGATGCTTTTCTTCTATCTGAACAAACAAACGGTATCGGAGAGACGGAGAAGGAGGCGATTAGTAGGATGACGAACTTATCGCGAAATGGGTTCGAGGAAATAATGAAAGGCAACAGTCTAGATGCAATGGTGACATTAGGGACAGGAGCAGAAAGTGTCCTAGCAATTGGGGGATACCCTGCAATAAGTGTCCCAGCTGGATATGAAGGAAATGGAGAGCCATTTGGGATTATGTTTGGGGGTCTGAAGGGGACTGAACCAAAGCTAATTGAGATTGCTTATGCATATGAACAAGCCACCTTGCTTCAACTTCAAACCTCCATGGCCTACTCTTCACCACTTAGTTCTGTAGCCTTCTCGTTGCTTCTGATTGCTGTAGCGGTTCGAGGATCGTCAATCAGAGAAGCCACAGTGCATGACCTCCAGCTAGCTTTCAAGCAAAATCAGCTCACTTCGAGGAGACTTGTCGAGTTCTACATTGGAGAAATTCGCAGACTCAACCCAGTTGTTCATGGGGTCATAGAAATCAACCCAGATGCATTGCTGCAAGCTTACAAGGCTGACAGAGAACGTGAGGCTAAGAAGCCTGGATCACTTTGTGGGCTGCATGGAATTCCAGTTTTACTCAAGGATAACATTGGGACTAAGGATAAGTTGAATACTACTGCTGGATCATTCGCATTGCTCGGCTCTATCGTGCCTCGTGATGCAGGCGTAGTGAAGAGACTAAGAATGGCTGGAGCCATCATACTGGGAAAGGCTAGCTTGAGTGAATGGGCTGATTTTAGGTCCCTCACTGCTCCAGCTGGTTTGAGCGCTAGAGGTGGGCAGGGAAAGAATCCATATGTTTTATCAGCATCACCCTGTGGATCCAGCAGTGGACCTTCTATATCAGTTGCAGCAAACATAGCAGCAGTGTCAATAGGAACTGAGACCGACGGTTCTATCCTCTGTCCGGCTAGTTTCAACTCGGTTGTCGGCATCAAACCAACGGTCGGCCTTACTAGTAGAGCAGAAAACATAGAAATCATCTTAAACGTGACTGCAAGTGGCGAAGCAGCAGCATTGCTTGCTGAATTCAAACAATCTTTAAATGGGTACCTGAAAGAGCTCGTGGCTTCCCCTGTTCGAAGTTTAGCCGACATAATCGCCTTCAATAACGCAAACCCAGATCAGGAATTACTCGACGTTTTCGGCCAGGAGATTTTTCTGGCGGCCGAAGCCACAAATGGGATCGGCGACGTGCAGACGGCGTCTTTGTTGAGCTTAGCAAAGCTGACGGAAGATGGGTTTGAGAAGCTTGTGAAGGAGAAGCGGTTGGATGCGGTGGTGACGCCAGGTTCCGGCATAGCTACAGTGCTTGCAATTGGGGGTTTTCCGGGAATCAATGTTCCGGCGGGATACGACGGCGGAGGAGTTCCATTTGGGATTAACTTTGGAGGGTTGAAGGGTTCAGAGACGAAGCTGATTGAGACTGCCACCATAAGCTACATCTCCCCTACCGGTCATTGCACCCCCAGTCACAACTAA 2505 50.3 MEPFSYKIRTLSHPISDQTPPPPPPAATSPSERMNIVFFLSAFLLFTGGANSSDFPIEEATIAEIQNAFSQNKLTSTQLLDHYLNKIHFLNPVLKSVLEVNPDARAQAEAADRERLLAGGKALGELHGIPVLLKDAIATKDRLNTTAGSFALLGSVVPRDATVASRLRNAGAVILGKTSLTEWYGSRSWNLPNGWCARGGQALNPYGKGGDPCGSSSGSAISVAANMAAVSLGTETDGSILCPADYNSVVGIKPTVGLTSRAGVIPISPRQDTIGGEFITMIAEFKLTINDYLKKLIQSPVRSLADIIAFNNNHAELENMIEYGQDAFLLSEQTNGIGETEKEAISRMTNLSRNGFEEIMKGNSLDAMVTLGTGAESVLAIGGYPAISVPAGYEGNGEPFGIMFGGLKGTEPKLIEIAYAYEQATLLQLQTSMAYSSPLSSVAFSLLLIAVAVRGSSIREATVHDLQLAFKQNQLTSRRLVEFYIGEIRRLNPVVHGVIEINPDALLQAYKADREREAKKPGSLCGLHGIPVLLKDNIGTKDKLNTTAGSFALLGSIVPRDAGVVKRLRMAGAIILGKASLSEWADFRSLTAPAGLSARGGQGKNPYVLSASPCGSSSGPSISVAANIAAVSIGTETDGSILCPASFNSVVGIKPTVGLTSRAENIEIILNVTASGEAAALLAEFKQSLNGYLKELVASPVRSLADIIAFNNANPDQELLDVFGQEIFLAAEATNGIGDVQTASLLSLAKLTEDGFEKLVKEKRLDAVVTPGSGIATVLAIGGFPGINVPAGYDGGGVPFGINFGGLKGSETKLIETATISYISPTGHCTPSHN 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20327281 20342175 + Lsi11G011850.1 Lsi11g01185 674352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01185 834 Pfam Amidase 79 275 IPR023631 -
Lsi11g01185 834 Pfam Amidase 480 667 IPR023631 -
Lsi11g01185 834 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 664 818 - -
Lsi11g01185 834 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 451 668 - -
Lsi11g01185 834 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 51 275 - -
Lsi11g01185 834 PANTHER AMIDASE 276 428 - -
Lsi11g01185 834 SUPERFAMILY Amidase signature (AS) enzymes 56 425 IPR036928 -
Lsi11g01185 834 MobiDBLite consensus disorder prediction 10 30 - -
Lsi11g01185 834 SUPERFAMILY Amidase signature (AS) enzymes 448 819 IPR036928 -
Lsi11g01185 834 PANTHER AMIDASE 51 275 - -
Lsi11g01185 834 Gene3D Amidase signature (AS) domain 47 276 IPR036928 -
Lsi11g01185 834 Gene3D Amidase signature (AS) domain 449 673 IPR036928 -
Lsi11g01185 834 Gene3D Amidase signature (AS) domain 277 428 IPR036928 -
Lsi11g01185 834 PANTHER AMIDASE 451 668 - -
Lsi11g01185 834 PANTHER AMIDASE 664 818 - -
Lsi11g01185 834 Gene3D Amidase signature (AS) domain 674 822 IPR036928 -
Lsi11g01185 834 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 276 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01185 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - zju:107427585 442.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00470 Lsi11g01185 CCT
Lsi10g00470 Lsi11g01185 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01185 Lsi-Chr11:20327281 Lsi01g01983 Lsi-Chr1:26368087 1.54E-16 dispersed
Lsi07g01393 Lsi-Chr7:20263626 Lsi11g01185 Lsi-Chr11:20327281 1.65E-08 transposed
Lsi11g01652 Lsi-Chr11:24815943 Lsi11g01185 Lsi-Chr11:20327281 4.44E-16 transposed
Lsi10g00470 Lsi-Chr10:6817630 Lsi11g01185 Lsi-Chr11:20327281 4.26E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1219 Cone8ag1272 . . Lsi10g00470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01185 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01185 Lsi_Chr11 FPKM 15.524383 17.486952 16.794762 15.478934 0.811817 0.399935 0.659721 38.289074 41.607349 39.308041