Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01187 ATGGAAAATGGGGTTGAGATTGTTGATGGATTGCACGATGGAGAGAAGAAATTTGTGGAAGATGGTGTTTCACGAGATAGGGTAGATGAAACAGTTGTAGTTGGTTCTCACGAATCTAAGGATACGGAAGGGGAAGATGTTTTTGAGGAGGCATTAGATGGGAAAGATCATTTAATAGAGCAGAGTCCAAAATATGGTTCGGTGAATGGTGATGTTGTAGAAGAAGAAGAAATCAATGATTTTACATCTGGAGTGACTTCTGACCATCCTAATGGTGCTCACGGTGAAGAGAAGTTTGAAGAGGCAATTGAGGCTTCTAGTGGGGTGAATGAAAACACGGTGGTGGAGGAGCAAGATGTGAATTCTGAGAAGGAGACGGAAGCCTTGGATGGGGAATTGGTTGACAACGCAGTTGTGGCTTCTACAATTGATGAGAGAGGAACTGGAGAGGAAGCAGTGACTTCTGAGTTGAATGATAGAAAGGATAATGAGTTGGATTTCAGTATAGATGATTCAAGAAAGGAGACATCAGAGAACGGTGCTAGCCCAGAGGTTGAAGAAGTGCTGAAAGGTGGGGATGAGGATGATTTGAAATATGGTTCAACAATTATGAAGTCTGAAAATAAAGACAGTGACAATTTGAATGTGACTTTGCCTTCAGATGACGAAATAGTGAATAAGAGTGCCGGTTTGGTAGGGGGGACTAACCTGGATTCTACCAGTGAGATTCTTACTGAAAATCAAGATGTCGTGGAATTGAATGGGAAGAGCTTAGGTACAGAGTCTACAGACCATGTTGAGAAGACTGAGGAGCTATTAAATGCACCCGTTGTTCTTGATTTGGACAATCCAGATAATACGAATGCTGAGCTAAGGGATGATTCTCTTCACGTGGATCTGGAACTGCCAGACAATGAGAGTGAAGACATAAAAAAGGCTACAACTAGTATTGATCCTAAGAAGGATGATAATAAAGATGAAGAAAGCTCTTCAGCCTGCATGACTACCACAAATCAGGATGACAGGATTGAGGAAGTGAAAGATGCTTCTATTGGGAAAGACTCAGAAGAGCCATCTAGAGAATCTCGTGAATTGAATGGTACTACTTCTGCTGACCAACGTGAACCTATGGGTGAAAATGAAATTTCTCTGGAGACAGTTAAGGATATCTCAGCTTCTGAAAAGATAGCAGATGAGAAAATTGAGAAGATCCAGGGCAGTGAAAGTGATGTGACTGTAAAGGAAGACAATACGTCTAGACATCAGCATCCTGTTGATAGTTCCAATAATGGCCCCAACATTGGAGGGCTTGAAAAGACAGAGAGCAAAGATAAGGTTGGACAGGACAAAACTCAAGTGAACAGGGATCCAGAGATTCAACCTGCATCAATCATTGCTTCATCATCTGGAAAATCTACAAATCCCACTCCTCCTGCCCGTCCAGCTGGTCTTGGGCGTGCTGCTCCATTATTGGAACCTGCCCCTCGGGTGGTGCAGCCGCCTCGAGTTAATGGTACTGTATCCCATGTTCAAATGCAACAAATTGATGATCCTGTTAATGGGGATGCTGAGGAAAATGATGATACTCGCGAGCAACTCCAGATGATAAGAGTGAAATTTTTGCGTCTTGCACATAGGCTCGGGCAAACTCCACACAATGTTGTTGTGGCACAAGTTCTATACCGTCTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGAGGTCGGGTTGGTGCTTTCAGCTTTGACCGTGCCAGTGCCATGGCAGAGCAGCTGGAGGCAGCTGGGCAGGAACCACTTGATTTCTCTTGTACAATCATGGTTCTTGGAAAGACAGGTGTGGGTAAAAGCGCTACCATAAACTCCATCTTCGACGAAGTTAAATTCAGTACTGATGCTTTTCAAATGGGCACAACAAAGGTTCAAGATGTTGTAGGAACCGTGCAGGGGATCAAAGTACGGGTAATTGACACTCCTGGCCTTCTTTCCTCTTGGTCAGACCAGCGCCAAAATGAGAAGATCCTTCTCTCTGTTAAGCGTTTTATAAAGAAGACGCCTCCAGATATTGTTCTGTATCTTGATAGGTTGGACATGCAAACCCGGGATTTCAGTGACATGCCACTCTTGCGCACAATTACTGAAATATTTGGACCATCAATATGGTTCAATGCAATTGTGGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGTCCCAATGGTACTGCTTCTAGTTATGATATGTTTGTCACTCAGCGATCTCATGTTGTACAGCAAGCTATACGCCAGGCTGCAGGGGATATGCGCCTTATGAATCCTGTCTCATTAGTGGAGAATCACTCTGCTTGCAGAACGAACAGAGCTGGGCAAAGGGTATTGCCGAATGGCCAGGTTTGGAAACCTCATTTATTATTGCTCTCATTTGCCTCAAAGATTTTGGCCGAAGCTAACACTCTTCTGAAGCTGCAAGATAGTCCTCCTGGGAGGCCATTTACTCCTCGGTCAAAGTCACCTCCTTTACCCTTCCTTCTCTCTTCCCTTCTTCAATCAAGACCTCAAGTTAAACTGCCAGAGGAACAGTTTGCTGATGATGATGGTCTTGAGGATGACCTTGATGAATCGTCAGATTCTGAAAATGAATCTGAATATGATGAGTTGCCACCTTTTAAACGATTGACAAAAGCACAGGTGGCAAAGCTCTCCAAAGCACAGAAGAAGGCCTACTTTGACGAGTTGGAATACAGAGAAAAACTTTTTATGAAGAAGCAACTAAAAGAAGAGAAAAGGAGAAGGAAGATGATGAAGAAAATGGCTGCTGAGGCAAAGGATCAACCCAGTGACGGCAGTGAGAATGTAGAGGAAGATGGTGGTGCTGCTGCGTCAGTGCCAGTTCCCATGCCCGATTTGGCATTACCTGCCTCTTTTGATTCTGATAATCCCACTCACCGGTACCGTTATCTTGATTCCTCTAACCAGTGGCTAATTAGGCCTGTACTCGAAACACATGGATGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAGAAGTTGTTTGTCGTCAAAGATACAATACCCATCTCTTTTAGTGGCCAAGTTACAAAGGATAAGAAGGATGCAAATGTTCAAATAGAGATGACCAGTTCGATAAAGCATGGGGAGACTAAAGCATCTTCCATTGGTTTCGATATGCAGACTGTTGGGAAGGATTTGGCCTATACATTACGTGGTGAGACAACATTCATTAATTTTAGGAAGAACAAGGCAATTGCTGGTCTGTCAGTTGCCCTATTAGGCGATGCCTTGTCTGCCGGATTCAAAGTTGAAGACAAATTGATTGCTAATAAGCGATTTCGATTAGTTGTGACTGGGGGTGCAATGACCGGTAGGGGAGATGTAGCTTATGGTGGCAGTCTGGAGGCTCAATTGAGAGATAAAGATTATCCTTTGGGTCGGTCACTTTCAACTCTTGGAATCTCAGTCATGGATTGGCACGGAGATCTTGCTATTGGTTGCAACGTACAATCTCAAGTTCCCGTTGGACGATCAACGAATCTGATTGCTCGTGTGAATTTGAATAACAGGGGGGCAGGGCAAGTCAGCTTTCGGTTAAACAGCTCAGAACAGCTTCAGATAGCTATTGTTGGGCTCCTTCCTCTATTCAGAAAACTTCTGGGTTGTTATCAATACTGGCAGGATGGACAATGA 3708 43.88 MENGVEIVDGLHDGEKKFVEDGVSRDRVDETVVVGSHESKDTEGEDVFEEALDGKDHLIEQSPKYGSVNGDVVEEEEINDFTSGVTSDHPNGAHGEEKFEEAIEASSGVNENTVVEEQDVNSEKETEALDGELVDNAVVASTIDERGTGEEAVTSELNDRKDNELDFSIDDSRKETSENGASPEVEEVLKGGDEDDLKYGSTIMKSENKDSDNLNVTLPSDDEIVNKSAGLVGGTNLDSTSEILTENQDVVELNGKSLGTESTDHVEKTEELLNAPVVLDLDNPDNTNAELRDDSLHVDLELPDNESEDIKKATTSIDPKKDDNKDEESSSACMTTTNQDDRIEEVKDASIGKDSEEPSRESRELNGTTSADQREPMGENEISLETVKDISASEKIADEKIEKIQGSESDVTVKEDNTSRHQHPVDSSNNGPNIGGLEKTESKDKVGQDKTQVNRDPEIQPASIIASSSGKSTNPTPPARPAGLGRAAPLLEPAPRVVQPPRVNGTVSHVQMQQIDDPVNGDAEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTTKVQDVVGTVQGIKVRVIDTPGLLSSWSDQRQNEKILLSVKRFIKKTPPDIVLYLDRLDMQTRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRPFTPRSKSPPLPFLLSSLLQSRPQVKLPEEQFADDDGLEDDLDESSDSENESEYDELPPFKRLTKAQVAKLSKAQKKAYFDELEYREKLFMKKQLKEEKRRRKMMKKMAAEAKDQPSDGSENVEEDGGAAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVVKDTIPISFSGQVTKDKKDANVQIEMTSSIKHGETKASSIGFDMQTVGKDLAYTLRGETTFINFRKNKAIAGLSVALLGDALSAGFKVEDKLIANKRFRLVVTGGAMTGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGISVMDWHGDLAIGCNVQSQVPVGRSTNLIARVNLNNRGAGQVSFRLNSSEQLQIAIVGLLPLFRKLLGCYQYWQDGQ 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20341825 20345532 - Lsi11G011870.1 Lsi11g01187 674354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 933 949 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 453 476 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 81 127 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 862 882 - -
Lsi11g01187 1235 Pfam AIG1 family 604 737 IPR006703 GO:0005525
Lsi11g01187 1235 Pfam Translocase of chloroplast 159/132, membrane anchor domain 962 1225 IPR024283 -
Lsi11g01187 1235 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 388 1227 IPR045058 -
Lsi11g01187 1235 CDD Toc34_like 576 821 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 391 422 - -
Lsi11g01187 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 738 IPR027417 -
Lsi11g01187 1235 ProSiteProfiles AIG1-type G domain profile. 601 830 IPR006703 GO:0005525
Lsi11g01187 1235 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 388 1227 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 276 486 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 149 205 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 340 363 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 286 329 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 858 888 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 438 452 - -
Lsi11g01187 1235 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 480 1228 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 140 216 - -
Lsi11g01187 1235 Coils Coil 924 944 - -
Lsi11g01187 1235 MobiDBLite consensus disorder prediction 929 961 - -
Lsi11g01187 1235 Gene3D - 573 821 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01187 - - - cmo:103490300 2131.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01058 Lsi-Chr3:20310596 Lsi11g01187 Lsi-Chr11:20341825 0 dispersed
Lsi07g01104 Lsi-Chr7:16432756 Lsi11g01187 Lsi-Chr11:20341825 4.99E-34 dispersed
Lsi11g00350 Lsi-Chr11:3681778 Lsi11g01187 Lsi-Chr11:20341825 2.64E-169 dispersed
Lsi11g01007 Lsi-Chr11:17035447 Lsi11g01187 Lsi-Chr11:20341825 1.87E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01187 Lsi_Chr11 FPKM 55.96162 64.733902 108.853996 116.675575 18.867983 15.571046 16.541752 130.602005 123.450111 113.332138