Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01194 ATGAACCTCTCTCAGCTCCAACTCAACAATCTCTCCGTCGCCAAAGACCTCGGAAAGGCCTTTGGCCTCCTCGCCGGCCTCGCCTCCGACCGATTCTCCACCTCCCTCCTCCTCCTCATCGGCTCCATCGAAGGCCTTATTGGCTACGGCGCTCAATGGCTCGTCGTCAGTCAAAAAATCAAACCACTCCCTTACTGGCAGATGCGTATATTTCTGTGTATGGGAGGGAATAGTACCACTTGGATGAACACCGGCGTGCTTGTTACTTGCCTGAGAAACTTCCGGCGAAACAGAGGCACTGTTTCCGGCATTCTCAAAGGCTACATCGCTCTCAGCACCGCCATTTTCACCGATCTCTGTTCCGCTCTTTTCTCCATTAACCCCTCTTCTTTTCTCGCCCTCCTCTCCCTCGTCCCTTTTGCCGTTTGCCTCACTGTTATTCTCTTCCTCTGTGAAATCTCCTGCTCCGCCGATAACGAAACGGAGGACTCCAGATACTTCTGGGTACTCAACGCCATTTCCGTCGCCGTCGCCGTCATTATGTTGGCATTCGATTCGATCCCACATCCCACCTCATCTCTATCGAGAATCTTCTCCATCGTGCTGCTGATTTTGCTCGCTTCACCTCTGGTAATCCCACTCCACTCGTTCCTCAAAAACAGGGGTCAGTCCGGTGAGGTTGCAGAGGTGCTGCTGGCGGATGAGAGTGCGGCGGAGGGTGCGGAAGAGGGGCAGCCGGTGATCGGAGAAGATCACACGATTATTGAGGCGATGAAGACGGTTGAATTTTGGATTCTGTTTGGGTCGTTTCTGTGTGGAGTAGGAACGGGATTGGCAGTGATGAACAATATGGGACAGATTGGATTGGCTATTGGATACGACGACATGCGTATATTTCTGTGTATGGGAGGGAATAGTACCACTTGGATGAACACCGGCGTGCTTGTTACTTGCCTGAGAAACTTCCGGCGAAACAGAGGCACTGTTTCCGGCATTCTCAAAGGCTACATCGCTCTCAGCACCGCCATTTTCACCGATCTCTGTTCCGCTCTTTTCTCCATTAACCCCTCTTCTTTTCTCGCCCTCCTCTCCCTCGTCCCTTTTGCCGTTTGCCTCACTGTTATTCTCTTCCTCTGTGAAATCTCCTGCTCCGCCGATAACGAAACGGAGGACTCCAGATACTTCTGGGTACTCAACGCCATTTCCGTCGCCGTCGCCGTCATTATGTTGGCATTCGATTCGATCCCACATCCCACCTCATCTCTATCGAGAATCTTCTCCATCGTGCTGCTGATTTTGCTCGCTTCACCTCTGGTAATCCCACTCCACTCGTTCCTCAAAAACAGGGGTCAGTCCGGTGAGGTTGCAGAGGTGCTGCTGGCGGATGAGAGTGCGGCGGAGGGTGCGGAAGAGGGGCAGCCGGTGATCGGAGAAGATCACACGATTATTGAGGCGATGAAGACGGTTGAATTTTGGATTCTGTTTGGGTCGTTTCTGTGTGGAGTAGGAACGGGATTGGCAGTGATGAACAATATGGGACAGATTGGATTGGCTATTGGATACGACGACGTTTCGATTTTCATATCGCTGATGAGTATTTGGGGGAAAGCAGGAATGCCAAGGCCACTATGGAATGCAGCTTCTCAAATTCTAATGGCACTTGGCTACATCGGCTCGATCATCGTTGGGATATGCTACGGTGTTCGTCTCGCCATCACCGTCCCAATGGCCTCTGAAATCTTCGGTCTCAAAAACTATGGCATGATCTACAACGTTCTAATTCTCAACCTCCCACTCGGTTCGTTCCTCTTCTCGGGACTGCTTGCAGGGATCCTTTACGACATGGAAGCGACGACGCCGAAGGGAGGCGGGAATACGTGTGCGGGAGGACATTGTTATAGGGTTGTATTTGTTGTAATGGCTTGTTCATGTGTGGTAGGATTTGCCATGGACTTGTTTTTGGCCTTTAGAACCAAGAGATTGTACTCCAAAATGAGGGCTCTAAAGAGATAA 2013 51.22 MNLSQLQLNNLSVAKDLGKAFGLLAGLASDRFSTSLLLLIGSIEGLIGYGAQWLVVSQKIKPLPYWQMRIFLCMGGNSTTWMNTGVLVTCLRNFRRNRGTVSGILKGYIALSTAIFTDLCSALFSINPSSFLALLSLVPFAVCLTVILFLCEISCSADNETEDSRYFWVLNAISVAVAVIMLAFDSIPHPTSSLSRIFSIVLLILLASPLVIPLHSFLKNRGQSGEVAEVLLADESAAEGAEEGQPVIGEDHTIIEAMKTVEFWILFGSFLCGVGTGLAVMNNMGQIGLAIGYDDMRIFLCMGGNSTTWMNTGVLVTCLRNFRRNRGTVSGILKGYIALSTAIFTDLCSALFSINPSSFLALLSLVPFAVCLTVILFLCEISCSADNETEDSRYFWVLNAISVAVAVIMLAFDSIPHPTSSLSRIFSIVLLILLASPLVIPLHSFLKNRGQSGEVAEVLLADESAAEGAEEGQPVIGEDHTIIEAMKTVEFWILFGSFLCGVGTGLAVMNNMGQIGLAIGYDDVSIFISLMSIWGKAGMPRPLWNAASQILMALGYIGSIIVGICYGVRLAITVPMASEIFGLKNYGMIYNVLILNLPLGSFLFSGLLAGILYDMEATTPKGGGNTCAGGHCYRVVFVVMACSCVVGFAMDLFLAFRTKRLYSKMRALKR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20389453 20403357 - Lsi11G011940.1 Lsi11g01194 674361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01194 670 SUPERFAMILY MFS general substrate transporter 264 660 IPR036259 -
Lsi11g01194 670 Pfam Nodulin-like 262 442 IPR010658 -
Lsi11g01194 670 Pfam Nodulin-like 1 214 IPR010658 -
Lsi11g01194 670 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 458 669 - -
Lsi11g01194 670 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 458 669 - -
Lsi11g01194 670 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 293 452 - -
Lsi11g01194 670 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 231 299 - -
Lsi11g01194 670 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 1 223 - -
Lsi11g01194 670 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 293 452 - -
Lsi11g01194 670 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 231 299 - -
Lsi11g01194 670 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01194 - - - cmo:103490296 623.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00482 Lsi11g01194 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01194 Lsi-Chr11:20389453 Lsi07g00429 Lsi-Chr7:4591177 6.05E-47 dispersed
Lsi10g00482 Lsi-Chr10:6946048 Lsi11g01194 Lsi-Chr11:20389453 4.52E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g141 . Blo15g00373 Bda06g00482 . Bpe07g00721 . . Bma12g00928 . Cmo11g01732 Cma02g00243 Cma20g00761 . Car20g00663 . Cpe04g00583 . Bhi05g01728 . . . Hepe02g0432 . . Cla02g00435 Cam02g0444 Cec02g0442 Cco02g0460 Clacu02g0446 Cmu02g0440 Cre02g0774 . . . . Lsi10g00482 Csa07g00091 Chy11g00271 Cme01g01273 . . . . . . . . . Cmo02g00245 Cmo20g00758 . . . . Cpe16g00309 Cpe05g01382 Bhi10g01865 Tan05g1158 . . Hepe10g1374 . . Cla02g01155 Cam02g1231 Cec02g1240 Cco02g1280 Clacu02g1212 Cmu02g1181 Cre02g1490 Lsi11g01194 Csa02g01375 Chy01g00687 Cme11g00393
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g00780 . 1 725 Nodulin-like Gene Family AT4G19180 58.7 5.3e-241 830.9
Lsi04g01840 . 24 306 Nodulin-like Gene Family AT3G45870 65.0 8.7e-96 347.1
Lsi02g01544 . 12 371 Nodulin-like Gene Family AT3G28050 58.8 3.8e-115 411.8
Lsi07g01289 . 2 360 Nodulin-like Gene Family AT5G47470 56.9 5.6e-101 364.8
Lsi03g01416 . 4 364 Nodulin-like Gene Family AT5G40230 50.7 3.2e-93 339.0
Lsi02g01544 . 10 333 Nodulin-like Gene Family AT5G40230 54.9 9.2e-93 337.4
Lsi03g01416 . 6 364 Nodulin-like Gene Family AT5G40240 50.7 3.8e-91 332.0
Lsi02g01544 . 3 333 Nodulin-like Gene Family AT5G40240 52.6 6.5e-91 331.3
Lsi08g01356 CCT,ECH 66 332 Nodulin-like Gene Family AT3G53210 56.6 2.7e-83 305.4
Lsi01g01401 . 99 364 Nodulin-like Gene Family AT2G37450 59.0 1.9e-84 309.3
Lsi04g00873 . 98 331 Nodulin-like Gene Family AT2G37450 57.7 2.1e-70 262.7
Lsi04g02384 . 83 317 Nodulin-like Gene Family AT2G37450 53.0 8.3e-64 240.7
Lsi01g01401 . 12 364 Nodulin-like Gene Family AT2G37460 65.5 2.5e-125 445.7
Lsi04g00873 . 11 331 Nodulin-like Gene Family AT2G37460 57.6 5.2e-99 358.2
Lsi02g01668 . 8 330 Nodulin-like Gene Family AT2G37460 52.3 4.0e-91 332.0
Lsi08g01356 CCT,ECH 54 444 Nodulin-like Gene Family AT1G75500 72.2 6.3e-161 563.9
Lsi04g01711 CCT,ECH 1 350 Nodulin-like Gene Family AT1G75500 64.6 3.1e-131 465.3
Lsi04g00524 . 12 318 Nodulin-like Gene Family AT1G60050 52.3 5.3e-88 321.6
Lsi01g01401 . 12 332 Nodulin-like Gene Family AT5G13670 53.1 2.3e-91 332.8
Lsi04g00873 . 12 340 Nodulin-like Gene Family AT2G39510 61.7 2.3e-112 402.5
Lsi01g01401 . 13 341 Nodulin-like Gene Family AT2G39510 60.2 1.2e-111 400.2
Lsi02g01668 . 8 331 Nodulin-like Gene Family AT2G39510 57.2 5.4e-109 391.3
Lsi04g02384 . 18 334 Nodulin-like Gene Family AT2G39510 50.4 1.5e-87 320.1
Lsi04g00874 CCT,ECH 8 297 Nodulin-like Gene Family AT2G39510 51.8 2.0e-87 319.7
Lsi02g01665 CCT,ECH 32 315 Nodulin-like Gene Family AT2G39510 52.3 2.5e-82 302.8
Lsi02g01666 . 1 242 Nodulin-like Gene Family AT2G39510 50.4 1.6e-65 246.9
Lsi08g00420 . 19 242 Nodulin-like Gene Family AT4G08290 56.7 1.3e-67 253.4
Lsi02g01665 CCT,ECH 22 203 Nodulin-like Gene Family AT4G08290 52.2 3.5e-44 175.6
Lsi04g02384 . 12 335 Nodulin-like Gene Family AT4G08300 61.6 1.4e-112 403.3
Lsi10g00701 . 33 286 Nodulin-like Gene Family AT5G64700 61.2 3.1e-79 292.0
Lsi10g00702 CCT 4 209 Nodulin-like Gene Family AT5G64700 55.4 3.1e-50 195.7
Lsi03g01630 . 10 332 Nodulin-like Gene Family AT5G07050 65.3 1.2e-119 426.8
Lsi03g01629 . 10 370 Nodulin-like Gene Family AT5G07050 60.8 1.8e-118 422.9
Lsi01g01762 . 10 273 Nodulin-like Gene Family AT5G07050 55.3 2.5e-96 349.4
Lsi02g01668 . 8 330 Nodulin-like Gene Family AT5G07050 50.2 3.4e-85 312.4
Lsi01g01762 . 13 291 Nodulin-like Gene Family AT3G56620 53.0 2.4e-88 322.8
Lsi04g00524 . 13 349 Nodulin-like Gene Family AT1G70260 51.2 7.1e-93 337.8
Lsi11g00654 . 5 311 Nodulin-like Gene Family AT1G09380 53.0 2.0e-95 346.3
Lsi03g01629 . 12 363 Nodulin-like Gene Family AT2G40900 52.6 3.3e-101 365.5
Lsi03g01630 . 12 337 Nodulin-like Gene Family AT2G40900 54.2 1.8e-99 359.8
Lsi01g01762 . 13 286 Nodulin-like Gene Family AT2G40900 54.2 1.3e-89 327.0
Lsi08g01356 CCT,ECH 66 410 Nodulin-like Gene Family AT3G18200 57.1 1.4e-107 386.7
Lsi06g01306 . 23 287 Nodulin-like Gene Family AT3G18200 51.5 1.4e-80 297.0
Lsi04g02384 . 12 335 Nodulin-like Gene Family AT1G44800 60.1 2.7e-113 405.6
Lsi04g01840 . 108 400 Nodulin-like Gene Family AT5G45370 63.6 2.9e-99 358.6
Lsi04g02384 . 12 294 Nodulin-like Gene Family AT1G21890 60.6 2.7e-102 369.0
Lsi03g01630 . 15 308 Nodulin-like Gene Family AT1G21890 51.3 3.4e-81 298.9
Lsi01g01401 . 11 313 Nodulin-like Gene Family AT1G21890 50.3 7.6e-81 297.7
Lsi07g00429 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 2.0e-187 652.5
Lsi07g00763 . 3 417 Nodulin-like Gene Family AT4G19450 67.7 5.4e-150 527.7
Lsi09g01880 . 44 442 Nodulin-like Gene Family AT4G19450 58.0 2.3e-129 459.1
Lsi06g01497 . 7 538 Nodulin-like Gene Family AT1G74780 60.1 1.8e-182 636.0
Lsi06g01498 . 10 527 Nodulin-like Gene Family AT1G74780 58.0 6.4e-172 600.9
Lsi10g00482 CCT 9 540 Nodulin-like Gene Family AT4G34950 70.4 3.6e-221 764.6
Lsi03g00402 . 6 641 Nodulin-like Gene Family AT5G14120 63.6 1.8e-228 788.9
Lsi10g00482 CCT 1 386 Nodulin-like Gene Family AT2G16660 68.8 3.3e-149 525.0
Lsi11g01194 CCT 1 302 Nodulin-like Gene Family AT2G16660 61.8 1.1e-104 377.1
Lsi04g00096 . 14 563 Nodulin-like Gene Family AT2G39210 70.9 1.0e-226 783.1
Lsi04g00097 CCT,ECH 15 572 Nodulin-like Gene Family AT2G39210 67.6 2.1e-219 758.8
Lsi08g00691 CCT,ECH 31 613 Nodulin-like Gene Family AT2G39210 61.7 3.9e-210 728.0
Lsi04g00100 . 3 566 Nodulin-like Gene Family AT2G39210 63.0 2.2e-200 695.7
Lsi03g01994 . 1 555 Nodulin-like Gene Family AT2G39210 61.7 5.1e-194 674.5
Lsi03g00141 . 20 569 Nodulin-like Gene Family AT2G39210 59.6 4.7e-187 651.4
Lsi04g00099 . 3 489 Nodulin-like Gene Family AT2G39210 59.8 7.0e-183 637.5
Lsi03g01999 . 1 577 Nodulin-like Gene Family AT2G39210 56.5 1.0e-181 633.6
Lsi01g01296 . 18 535 Nodulin-like Gene Family AT2G39210 56.2 1.6e-166 583.2
Lsi02g01455 . 16 503 Nodulin-like Gene Family AT2G39210 52.7 5.4e-143 505.0
Lsi01g02076 . 28 259 Nodulin-like Gene Family AT2G39210 60.3 3.7e-75 279.6
Lsi01g02077 . 12 197 Nodulin-like Gene Family AT2G39210 60.3 3.0e-61 233.4
Lsi04g00098 . 14 138 Nodulin-like Gene Family AT2G39210 72.8 1.6e-49 194.5
Lsi07g00763 . 7 565 Nodulin-like Gene Family AT3G01630 52.1 1.1e-148 523.9
Lsi09g01880 . 50 589 Nodulin-like Gene Family AT3G01630 51.1 4.8e-141 498.4
Lsi03g00402 . 6 477 Nodulin-like Gene Family AT3G01930 61.8 5.4e-161 564.3
Lsi06g01497 . 10 537 Nodulin-like Gene Family AT1G18940 55.6 4.2e-168 588.2
Lsi06g01498 . 7 520 Nodulin-like Gene Family AT1G18940 54.3 4.7e-159 558.1
Lsi06g01497 . 6 539 Nodulin-like Gene Family AT2G34350 56.5 4.5e-162 568.2
Lsi06g01498 . 11 525 Nodulin-like Gene Family AT2G34350 54.5 2.7e-154 542.3
Lsi03g00141 . 15 578 Nodulin-like Gene Family AT2G28120 69.0 2.6e-219 758.4
Lsi04g00096 . 9 568 Nodulin-like Gene Family AT2G28120 62.0 4.0e-196 681.4
Lsi04g00097 CCT,ECH 9 571 Nodulin-like Gene Family AT2G28120 58.8 3.0e-191 665.2
Lsi08g00691 CCT,ECH 29 596 Nodulin-like Gene Family AT2G28120 58.8 3.5e-184 641.7
Lsi03g01994 . 19 563 Nodulin-like Gene Family AT2G28120 59.5 5.3e-180 627.9
Lsi04g00100 . 1 570 Nodulin-like Gene Family AT2G28120 55.9 7.4e-174 607.4
Lsi03g01999 . 19 563 Nodulin-like Gene Family AT2G28120 57.0 1.3e-173 606.7
Lsi02g01455 . 13 517 Nodulin-like Gene Family AT2G28120 57.0 1.5e-163 573.2
Lsi03g00144 . 1 551 Nodulin-like Gene Family AT2G28120 53.8 8.5e-162 567.4
Lsi04g00099 . 1 488 Nodulin-like Gene Family AT2G28120 52.6 7.4e-158 554.3
Lsi01g01296 . 16 535 Nodulin-like Gene Family AT2G28120 55.0 2.6e-155 545.8
Lsi03g00143 . 1 565 Nodulin-like Gene Family AT2G28120 51.5 2.1e-152 536.2
Lsi03g00142 . 4 538 Nodulin-like Gene Family AT2G28120 51.2 5.9e-147 518.1
Lsi01g02076 . 28 261 Nodulin-like Gene Family AT2G28120 58.5 3.9e-74 276.2
Lsi01g02077 . 1 196 Nodulin-like Gene Family AT2G28120 55.3 3.3e-57 219.9
Lsi04g00098 . 14 138 Nodulin-like Gene Family AT2G28120 68.8 1.0e-45 181.8
Lsi07g00763 . 4 570 Nodulin-like Gene Family AT1G31470 56.9 1.8e-167 586.3
Lsi09g01880 . 50 596 Nodulin-like Gene Family AT1G31470 55.9 3.3e-161 565.5
Lsi08g00551 . 17 217 Nodulin-like Gene Family AT1G76800 68.7 2.4e-68 255.4
Lsi03g00875 . 10 202 Nodulin-like Gene Family AT1G76800 62.7 9.3e-60 226.9
Lsi02g02019 . 35 197 Nodulin-like Gene Family AT1G76800 76.7 1.2e-59 226.5
Lsi03g00875 . 14 202 Nodulin-like Gene Family AT3G25190 68.6 2.4e-64 242.3
Lsi08g00551 . 23 217 Nodulin-like Gene Family AT3G25190 62.6 3.9e-59 224.9
Lsi02g02019 . 42 197 Nodulin-like Gene Family AT3G25190 63.2 1.2e-47 186.8
Lsi08g00551 . 20 217 Nodulin-like Gene Family AT1G21140 73.7 7.5e-73 270.4
Lsi03g00875 . 7 202 Nodulin-like Gene Family AT1G21140 62.8 2.8e-64 241.9
Lsi02g02019 . 25 203 Nodulin-like Gene Family AT1G21140 69.3 5.5e-60 227.6
Lsi08g00551 . 20 214 Nodulin-like Gene Family AT3G43630 75.9 1.7e-72 269.2
Lsi03g00875 . 7 199 Nodulin-like Gene Family AT3G43630 63.7 3.8e-61 231.5
Lsi02g02019 . 28 203 Nodulin-like Gene Family AT3G43630 70.4 7.2e-60 227.3
Lsi08g00551 . 20 217 Nodulin-like Gene Family AT3G43660 72.7 2.4e-71 265.4
Lsi03g00875 . 7 202 Nodulin-like Gene Family AT3G43660 61.7 1.2e-62 236.5
Lsi02g02019 . 33 203 Nodulin-like Gene Family AT3G43660 70.2 2.7e-59 225.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0063391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01194 Lsi_Chr11 FPKM 7.760036 8.141341 41.41732 39.691837 38.97591 38.838581 40.404003 37.41291 36.538628 32.520336