Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g01194 | ATGAACCTCTCTCAGCTCCAACTCAACAATCTCTCCGTCGCCAAAGACCTCGGAAAGGCCTTTGGCCTCCTCGCCGGCCTCGCCTCCGACCGATTCTCCACCTCCCTCCTCCTCCTCATCGGCTCCATCGAAGGCCTTATTGGCTACGGCGCTCAATGGCTCGTCGTCAGTCAAAAAATCAAACCACTCCCTTACTGGCAGATGCGTATATTTCTGTGTATGGGAGGGAATAGTACCACTTGGATGAACACCGGCGTGCTTGTTACTTGCCTGAGAAACTTCCGGCGAAACAGAGGCACTGTTTCCGGCATTCTCAAAGGCTACATCGCTCTCAGCACCGCCATTTTCACCGATCTCTGTTCCGCTCTTTTCTCCATTAACCCCTCTTCTTTTCTCGCCCTCCTCTCCCTCGTCCCTTTTGCCGTTTGCCTCACTGTTATTCTCTTCCTCTGTGAAATCTCCTGCTCCGCCGATAACGAAACGGAGGACTCCAGATACTTCTGGGTACTCAACGCCATTTCCGTCGCCGTCGCCGTCATTATGTTGGCATTCGATTCGATCCCACATCCCACCTCATCTCTATCGAGAATCTTCTCCATCGTGCTGCTGATTTTGCTCGCTTCACCTCTGGTAATCCCACTCCACTCGTTCCTCAAAAACAGGGGTCAGTCCGGTGAGGTTGCAGAGGTGCTGCTGGCGGATGAGAGTGCGGCGGAGGGTGCGGAAGAGGGGCAGCCGGTGATCGGAGAAGATCACACGATTATTGAGGCGATGAAGACGGTTGAATTTTGGATTCTGTTTGGGTCGTTTCTGTGTGGAGTAGGAACGGGATTGGCAGTGATGAACAATATGGGACAGATTGGATTGGCTATTGGATACGACGACATGCGTATATTTCTGTGTATGGGAGGGAATAGTACCACTTGGATGAACACCGGCGTGCTTGTTACTTGCCTGAGAAACTTCCGGCGAAACAGAGGCACTGTTTCCGGCATTCTCAAAGGCTACATCGCTCTCAGCACCGCCATTTTCACCGATCTCTGTTCCGCTCTTTTCTCCATTAACCCCTCTTCTTTTCTCGCCCTCCTCTCCCTCGTCCCTTTTGCCGTTTGCCTCACTGTTATTCTCTTCCTCTGTGAAATCTCCTGCTCCGCCGATAACGAAACGGAGGACTCCAGATACTTCTGGGTACTCAACGCCATTTCCGTCGCCGTCGCCGTCATTATGTTGGCATTCGATTCGATCCCACATCCCACCTCATCTCTATCGAGAATCTTCTCCATCGTGCTGCTGATTTTGCTCGCTTCACCTCTGGTAATCCCACTCCACTCGTTCCTCAAAAACAGGGGTCAGTCCGGTGAGGTTGCAGAGGTGCTGCTGGCGGATGAGAGTGCGGCGGAGGGTGCGGAAGAGGGGCAGCCGGTGATCGGAGAAGATCACACGATTATTGAGGCGATGAAGACGGTTGAATTTTGGATTCTGTTTGGGTCGTTTCTGTGTGGAGTAGGAACGGGATTGGCAGTGATGAACAATATGGGACAGATTGGATTGGCTATTGGATACGACGACGTTTCGATTTTCATATCGCTGATGAGTATTTGGGGGAAAGCAGGAATGCCAAGGCCACTATGGAATGCAGCTTCTCAAATTCTAATGGCACTTGGCTACATCGGCTCGATCATCGTTGGGATATGCTACGGTGTTCGTCTCGCCATCACCGTCCCAATGGCCTCTGAAATCTTCGGTCTCAAAAACTATGGCATGATCTACAACGTTCTAATTCTCAACCTCCCACTCGGTTCGTTCCTCTTCTCGGGACTGCTTGCAGGGATCCTTTACGACATGGAAGCGACGACGCCGAAGGGAGGCGGGAATACGTGTGCGGGAGGACATTGTTATAGGGTTGTATTTGTTGTAATGGCTTGTTCATGTGTGGTAGGATTTGCCATGGACTTGTTTTTGGCCTTTAGAACCAAGAGATTGTACTCCAAAATGAGGGCTCTAAAGAGATAA | 2013 | 51.22 | MNLSQLQLNNLSVAKDLGKAFGLLAGLASDRFSTSLLLLIGSIEGLIGYGAQWLVVSQKIKPLPYWQMRIFLCMGGNSTTWMNTGVLVTCLRNFRRNRGTVSGILKGYIALSTAIFTDLCSALFSINPSSFLALLSLVPFAVCLTVILFLCEISCSADNETEDSRYFWVLNAISVAVAVIMLAFDSIPHPTSSLSRIFSIVLLILLASPLVIPLHSFLKNRGQSGEVAEVLLADESAAEGAEEGQPVIGEDHTIIEAMKTVEFWILFGSFLCGVGTGLAVMNNMGQIGLAIGYDDMRIFLCMGGNSTTWMNTGVLVTCLRNFRRNRGTVSGILKGYIALSTAIFTDLCSALFSINPSSFLALLSLVPFAVCLTVILFLCEISCSADNETEDSRYFWVLNAISVAVAVIMLAFDSIPHPTSSLSRIFSIVLLILLASPLVIPLHSFLKNRGQSGEVAEVLLADESAAEGAEEGQPVIGEDHTIIEAMKTVEFWILFGSFLCGVGTGLAVMNNMGQIGLAIGYDDVSIFISLMSIWGKAGMPRPLWNAASQILMALGYIGSIIVGICYGVRLAITVPMASEIFGLKNYGMIYNVLILNLPLGSFLFSGLLAGILYDMEATTPKGGGNTCAGGHCYRVVFVVMACSCVVGFAMDLFLAFRTKRLYSKMRALKR | 670 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 20389453 | 20403357 | - | Lsi11G011940.1 | Lsi11g01194 | 674361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g01194 | 670 | SUPERFAMILY | MFS general substrate transporter | 264 | 660 | IPR036259 | - | |
| Lsi11g01194 | 670 | Pfam | Nodulin-like | 262 | 442 | IPR010658 | - | |
| Lsi11g01194 | 670 | Pfam | Nodulin-like | 1 | 214 | IPR010658 | - | |
| Lsi11g01194 | 670 | PANTHER | MAJOR FACILITATOR SUPERFAMILY PROTEIN | 458 | 669 | - | - | |
| Lsi11g01194 | 670 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 458 | 669 | - | - | |
| Lsi11g01194 | 670 | PANTHER | MAJOR FACILITATOR SUPERFAMILY PROTEIN | 293 | 452 | - | - | |
| Lsi11g01194 | 670 | PANTHER | MAJOR FACILITATOR SUPERFAMILY PROTEIN | 231 | 299 | - | - | |
| Lsi11g01194 | 670 | PANTHER | MAJOR FACILITATOR SUPERFAMILY PROTEIN | 1 | 223 | - | - | |
| Lsi11g01194 | 670 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 293 | 452 | - | - | |
| Lsi11g01194 | 670 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 231 | 299 | - | - | |
| Lsi11g01194 | 670 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 1 | 223 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi10g00482 | Lsi11g01194 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi11g01194 | Lsi-Chr11:20389453 | Lsi07g00429 | Lsi-Chr7:4591177 | 6.05E-47 | dispersed | |
| Lsi10g00482 | Lsi-Chr10:6946048 | Lsi11g01194 | Lsi-Chr11:20389453 | 4.52E-131 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g01194 | - | - | cmo:103490296 | 623.624 |