Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01194 ATGAACCTCTCTCAGCTCCAACTCAACAATCTCTCCGTCGCCAAAGACCTCGGAAAGGCCTTTGGCCTCCTCGCCGGCCTCGCCTCCGACCGATTCTCCACCTCCCTCCTCCTCCTCATCGGCTCCATCGAAGGCCTTATTGGCTACGGCGCTCAATGGCTCGTCGTCAGTCAAAAAATCAAACCACTCCCTTACTGGCAGATGCGTATATTTCTGTGTATGGGAGGGAATAGTACCACTTGGATGAACACCGGCGTGCTTGTTACTTGCCTGAGAAACTTCCGGCGAAACAGAGGCACTGTTTCCGGCATTCTCAAAGGCTACATCGCTCTCAGCACCGCCATTTTCACCGATCTCTGTTCCGCTCTTTTCTCCATTAACCCCTCTTCTTTTCTCGCCCTCCTCTCCCTCGTCCCTTTTGCCGTTTGCCTCACTGTTATTCTCTTCCTCTGTGAAATCTCCTGCTCCGCCGATAACGAAACGGAGGACTCCAGATACTTCTGGGTACTCAACGCCATTTCCGTCGCCGTCGCCGTCATTATGTTGGCATTCGATTCGATCCCACATCCCACCTCATCTCTATCGAGAATCTTCTCCATCGTGCTGCTGATTTTGCTCGCTTCACCTCTGGTAATCCCACTCCACTCGTTCCTCAAAAACAGGGGTCAGTCCGGTGAGGTTGCAGAGGTGCTGCTGGCGGATGAGAGTGCGGCGGAGGGTGCGGAAGAGGGGCAGCCGGTGATCGGAGAAGATCACACGATTATTGAGGCGATGAAGACGGTTGAATTTTGGATTCTGTTTGGGTCGTTTCTGTGTGGAGTAGGAACGGGATTGGCAGTGATGAACAATATGGGACAGATTGGATTGGCTATTGGATACGACGACATGCGTATATTTCTGTGTATGGGAGGGAATAGTACCACTTGGATGAACACCGGCGTGCTTGTTACTTGCCTGAGAAACTTCCGGCGAAACAGAGGCACTGTTTCCGGCATTCTCAAAGGCTACATCGCTCTCAGCACCGCCATTTTCACCGATCTCTGTTCCGCTCTTTTCTCCATTAACCCCTCTTCTTTTCTCGCCCTCCTCTCCCTCGTCCCTTTTGCCGTTTGCCTCACTGTTATTCTCTTCCTCTGTGAAATCTCCTGCTCCGCCGATAACGAAACGGAGGACTCCAGATACTTCTGGGTACTCAACGCCATTTCCGTCGCCGTCGCCGTCATTATGTTGGCATTCGATTCGATCCCACATCCCACCTCATCTCTATCGAGAATCTTCTCCATCGTGCTGCTGATTTTGCTCGCTTCACCTCTGGTAATCCCACTCCACTCGTTCCTCAAAAACAGGGGTCAGTCCGGTGAGGTTGCAGAGGTGCTGCTGGCGGATGAGAGTGCGGCGGAGGGTGCGGAAGAGGGGCAGCCGGTGATCGGAGAAGATCACACGATTATTGAGGCGATGAAGACGGTTGAATTTTGGATTCTGTTTGGGTCGTTTCTGTGTGGAGTAGGAACGGGATTGGCAGTGATGAACAATATGGGACAGATTGGATTGGCTATTGGATACGACGACGTTTCGATTTTCATATCGCTGATGAGTATTTGGGGGAAAGCAGGAATGCCAAGGCCACTATGGAATGCAGCTTCTCAAATTCTAATGGCACTTGGCTACATCGGCTCGATCATCGTTGGGATATGCTACGGTGTTCGTCTCGCCATCACCGTCCCAATGGCCTCTGAAATCTTCGGTCTCAAAAACTATGGCATGATCTACAACGTTCTAATTCTCAACCTCCCACTCGGTTCGTTCCTCTTCTCGGGACTGCTTGCAGGGATCCTTTACGACATGGAAGCGACGACGCCGAAGGGAGGCGGGAATACGTGTGCGGGAGGACATTGTTATAGGGTTGTATTTGTTGTAATGGCTTGTTCATGTGTGGTAGGATTTGCCATGGACTTGTTTTTGGCCTTTAGAACCAAGAGATTGTACTCCAAAATGAGGGCTCTAAAGAGATAA 2013 51.22 MNLSQLQLNNLSVAKDLGKAFGLLAGLASDRFSTSLLLLIGSIEGLIGYGAQWLVVSQKIKPLPYWQMRIFLCMGGNSTTWMNTGVLVTCLRNFRRNRGTVSGILKGYIALSTAIFTDLCSALFSINPSSFLALLSLVPFAVCLTVILFLCEISCSADNETEDSRYFWVLNAISVAVAVIMLAFDSIPHPTSSLSRIFSIVLLILLASPLVIPLHSFLKNRGQSGEVAEVLLADESAAEGAEEGQPVIGEDHTIIEAMKTVEFWILFGSFLCGVGTGLAVMNNMGQIGLAIGYDDMRIFLCMGGNSTTWMNTGVLVTCLRNFRRNRGTVSGILKGYIALSTAIFTDLCSALFSINPSSFLALLSLVPFAVCLTVILFLCEISCSADNETEDSRYFWVLNAISVAVAVIMLAFDSIPHPTSSLSRIFSIVLLILLASPLVIPLHSFLKNRGQSGEVAEVLLADESAAEGAEEGQPVIGEDHTIIEAMKTVEFWILFGSFLCGVGTGLAVMNNMGQIGLAIGYDDVSIFISLMSIWGKAGMPRPLWNAASQILMALGYIGSIIVGICYGVRLAITVPMASEIFGLKNYGMIYNVLILNLPLGSFLFSGLLAGILYDMEATTPKGGGNTCAGGHCYRVVFVVMACSCVVGFAMDLFLAFRTKRLYSKMRALKR 670
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 20389453 20403357 - Lsi11G011940.1 Lsi11g01194 674361
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01194 670 SUPERFAMILY MFS general substrate transporter 264 660 IPR036259 -
Lsi11g01194 670 Pfam Nodulin-like 262 442 IPR010658 -
Lsi11g01194 670 Pfam Nodulin-like 1 214 IPR010658 -
Lsi11g01194 670 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 458 669 - -
Lsi11g01194 670 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 458 669 - -
Lsi11g01194 670 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 293 452 - -
Lsi11g01194 670 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 231 299 - -
Lsi11g01194 670 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 1 223 - -
Lsi11g01194 670 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 293 452 - -
Lsi11g01194 670 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 231 299 - -
Lsi11g01194 670 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1 223 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Lsi10g00482 Lsi11g01194 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01194 Lsi-Chr11:20389453 Lsi07g00429 Lsi-Chr7:4591177 6.05E-47 dispersed
Lsi10g00482 Lsi-Chr10:6946048 Lsi11g01194 Lsi-Chr11:20389453 4.52E-131 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01194 - - cmo:103490296 623.624