Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01197 ATGGCTTCCAAGAGAATATTGAAGGAGCTTAAAGACTTGCAGAGAGACCCACCAACTTCTTGCAGTGCAGAGGACATGTTTCATTGGCAAGCAACCATTATTGGTCCTAGTGATAGTCCCTATTCTGGTGGAGTTTTTCTTGTTACCATTCATTTCCCTCCTGATTATCCTTTCAAACCTCCTAAGGTTTTGCTCTCAATTTGCTCCCTATTAACAGATCCAAACCCAGATGATCCATTGGTTCCTGAGATTGCTCATATGTGCAAGACTGACAAAATCAAATATGAATCCACTGCTAGGAGCTGGACCCAGAAATATGCTATGGGTTAA 330 41.82 MASKRILKELKDLQRDPPTSCSAEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20474248 20477367 + Lsi11G011970.1 Lsi11g01197 674364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01197 109 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 109 IPR000608 -
Lsi11g01197 109 SUPERFAMILY UBC-like 2 108 IPR016135 -
Lsi11g01197 109 Pfam Ubiquitin-conjugating enzyme 5 63 IPR000608 -
Lsi11g01197 109 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 63 - -
Lsi11g01197 109 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 62 106 - -
Lsi11g01197 109 PANTHER BNAA01G32320D PROTEIN 3 63 - -
Lsi11g01197 109 PANTHER BNAA01G32320D PROTEIN 62 106 - -
Lsi11g01197 109 SMART ubc_7 4 108 - -
Lsi11g01197 109 CDD UBCc 3 103 IPR000608 -
Lsi11g01197 109 Gene3D Ubiquitin Conjugating Enzyme 1 63 IPR016135 -
Lsi11g01197 109 Gene3D Ubiquitin Conjugating Enzyme 64 109 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01197 K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] - gmx:100787053 207.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01197 Lsi-Chr11:20474248 Lsi10g01489 Lsi-Chr10:19061529 3.81E-49 dispersed
Lsi11g01197 Lsi-Chr11:20474248 Lsi09g00043 Lsi-Chr9:389415 1.59E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g159 . Blo15g00379 Bda06g00478 . Bpe07g00716 . . . Cmo19g00745 Cmo11g01736 . . . . Sed04g3854 Cpe04g00588 Cpe15g00590 Bhi05g01717 Tan02g0688 Cmetu01g2289 . Hepe02g0427 . . Cla02g00431 Cam02g0439 Cec02g0437 Cco02g0455 Clacu02g0440 Cmu02g0435 Cre02g0769 . . . . . Csa07g00096 . Cme01g01265 . . . . . . . . . . . . Cma19g00737 . Car19g00566 . . . . . . . . . . . . . . . . Lsi11g01197 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030165 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01197 Lsi_Chr11 FPKM 7.166667 8.830651 4.780598 5.78408 8.58154 6.337605 10.101163 11.292462 14.132238 11.238821