Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01199 ATGGACGACGGGGAGCTTGATTTTTCGAATCAGGAAGTGTTTTCCAGCCCTAATATGGAGATTCCAAGCAGTTGTTCAATGGATAGTTTCTTTGATGAACTTCTCAAAGACACTCATACTTGTACTCATACACATACTTGCAATCCACCAGGCCCTGATTACTCTCATACCCACACATGTTTTCATGTCCACACTAAAATTGTCCCTGCCCCATCTGAAGAAGACAAGGTTGTTACTGATGACACTGCAGAATCGACTGAGAAGAAGTCGAAGAAACGCCCGTTGGGTAACCGTGAAGCTGTTCGTAAGTACCGTGAGAAGAAGAAGGCTAGGGCAGCTTCATTAGAGGATGAGGTTGTTAGATTGAGGGCTTTGAATCAGCATTTGATGAAGAGGTTGCAGGGGCAGGCAGCACTTGAGGCTGAGATTGCTAGGCTTAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGTTCTTTCCCTTACCAGAAAGCTGTCAATCCTAACTTGTCCAACCCAAGCATCCCTGGTGCTTATGTGATGAACCCATGTAATATGCAGTGTGAGGATCAGGTTTACTGCCTTCATCCTGGGGTCGATGGCAGCAGAAGCAGTGAAGGTGCTGTGATAAATGGACAAAGCTTTGGTGCTTGTGAATTTGAAAATCTTCAATGTTTGGCAAATCATGACTCGGGTTCGAAAGAGCTACCTGGGTGTGAAATAGGGAATGCAGTTTTGAATGATATTTCTTCAGGCACGATGAAGAAGAAAGGTGAAAACTGA 795 44.65 MDDGELDFSNQEVFSSPNMEIPSSCSMDSFFDELLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKIVPAPSEEDKVVTDDTAESTEKKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKAVNPNLSNPSIPGAYVMNPCNMQCEDQVYCLHPGVDGSRSSEGAVINGQSFGACEFENLQCLANHDSGSKELPGCEIGNAVLNDISSGTMKKKGEN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20487647 20488441 + Lsi11G011990.1 Lsi11g01199 674366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01199 264 Coils Coil 98 132 - -
Lsi11g01199 264 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
Lsi11g01199 264 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Lsi11g01199 264 MobiDBLite consensus disorder prediction 72 98 - -
Lsi11g01199 264 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 241 - -
Lsi11g01199 264 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Lsi11g01199 264 Pfam Basic region leucine zipper 86 142 IPR004827 GO:0003700|GO:0006355
Lsi11g01199 264 Gene3D - 75 153 - -
Lsi11g01199 264 PANTHER BASIC LEUCINE ZIPPER 23 1 241 - -
Lsi11g01199 264 CDD bZIP 91 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00496 Lsi11g01199 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00496 Lsi-Chr10:7120987 Lsi11g01199 Lsi-Chr11:20487647 4.25E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26195 PF07716 bZIP_2 8.40E-14 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01199 K25785 - csv:101208161 502.286