Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01200 ATGGCGGGAGAACAAGATGGCGGTGCCGATGAAGTTGTGGAGGAATTCGCCATCTGGAAGAAGAACTCTCCGTATTTGTACGATCTTCTAATTTCCCACTCGCTGGAATGGCCATCTCTCACCGTCGATTGGGTTCCATTGGCCCCCTTTCCTCACCAGGCCAACCCATCTCTTGCTGTTCATAAGCTCGTCCTTGGAACCCACACATCGGAGGATGTTCCCAATTTCCTCATGGTGGCCGATGCTATTTTGCCTGTCAAAGCATCCGAAACCAGAATCGACATTAGTGAGGAAAACCCCATTATGCCAAAGATAGAGATAACACAGAAGATACGTGTTGAAGGGGAGGTGAATAGAGCGCGGTGTATGCCGCAGAACCCAGAAATTGTTGGTGCAAAAACGAGTGGATGCGAGGTGTATGTTTTTAATTGTGCTAAACAGAGGGAGAAGGATCAGGGAGCTGAGTGCGGCCCAGATTTGAGATTGAGGGGTCATGATAAAGAGGGTTATGGGTTGTCTTGGAGCCCGTTTAAGGAGGGTTACCTCTTAAGTGGCTCAAATGATCAGAAAATCTGTTTGTGGGACGTGTCTTCCATGGCGGACAAGAATGTGCTTGATGCAATGCACGTTTATGAGGCTCATGAAAGCGTGGTCGGTGATGTGTCATGGCATTTGAAGAATGAGAACTTGTTTGGATCTGTAGGCGATGATTGCTTGTTGGTGATATGGGATTTGCGCACAAATAAATCTGTGGATTCTGTTCGAGCTCACGAGGAGGAGGTGAACTATGTTTCTTTCAATCCATATAACGAATGGATTTTAGCAACAGCATCATCAGATACCACAGTGGGTCTGTTTGATCTGCGGAAGCTTGCTGAACCATTGCACGCTCTTAGCAGCCACACGGAGGGAGTGTTTCAAGTGGAGTGGGATCCAAATCATGAAACTGTGTTGGCATCTTCTGGTGATGATAGAAGGTTGATGGTGTGGGAGCTAAACAACATAGGAAACGAGCAAGATGGAGATGCTGAAGATGGGCCTCCAGAGCTGTTGTTTTCACATGGAGGACACAAGGCTAAAATATCAGACTTCAGTTGGAACAGCAATGAGGCATGGGTCATTTCAAGTGTGGCTGAAGATAACTCAGTTCAGGTCTGGCAAATGGCCAAAAGTATTTACCGATGA 1185 46.92 MAGEQDGGADEVVEEFAIWKKNSPYLYDLLISHSLEWPSLTVDWVPLAPFPHQANPSLAVHKLVLGTHTSEDVPNFLMVADAILPVKASETRIDISEENPIMPKIEITQKIRVEGEVNRARCMPQNPEIVGAKTSGCEVYVFNCAKQREKDQGAECGPDLRLRGHDKEGYGLSWSPFKEGYLLSGSNDQKICLWDVSSMADKNVLDAMHVYEAHESVVGDVSWHLKNENLFGSVGDDCLLVIWDLRTNKSVDSVRAHEEEVNYVSFNPYNEWILATASSDTTVGLFDLRKLAEPLHALSSHTEGVFQVEWDPNHETVLASSGDDRRLMVWELNNIGNEQDGDAEDGPPELLFSHGGHKAKISDFSWNSNEAWVISSVAEDNSVQVWQMAKSIYR 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20491454 20493811 - Lsi11G012000.1 Lsi11g01200 674367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01200 394 Gene3D - 4 394 IPR015943 GO:0005515
Lsi11g01200 394 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 4 394 - -
Lsi11g01200 394 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Lsi11g01200 394 Pfam WD domain, G-beta repeat 293 330 IPR001680 GO:0005515
Lsi11g01200 394 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Lsi11g01200 394 Pfam WD domain, G-beta repeat 208 244 IPR001680 GO:0005515
Lsi11g01200 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 334 IPR001680 GO:0005515
Lsi11g01200 394 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 14 84 IPR022052 -
Lsi11g01200 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 334 - -
Lsi11g01200 394 SMART WD40_4 247 287 IPR001680 GO:0005515
Lsi11g01200 394 SMART WD40_4 204 244 IPR001680 GO:0005515
Lsi11g01200 394 SMART WD40_4 291 331 IPR001680 GO:0005515
Lsi11g01200 394 SMART WD40_4 155 195 IPR001680 GO:0005515
Lsi11g01200 394 SMART WD40_4 347 387 IPR001680 GO:0005515
Lsi11g01200 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 394 IPR001680 GO:0005515
Lsi11g01200 394 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Lsi11g01200 394 PRINTS G protein beta WD-40 repeat signature 182 196 IPR020472 -
Lsi11g01200 394 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Lsi11g01200 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 289 IPR001680 GO:0005515
Lsi11g01200 394 SUPERFAMILY WD40 repeat-like 108 389 IPR036322 GO:0005515
Lsi11g01200 394 ProSitePatterns Trp-Asp (WD) repeats signature. 182 196 IPR019775 -
Lsi11g01200 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 204 IPR001680 GO:0005515
Lsi11g01200 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 394 - -
Lsi11g01200 394 PANTHER WD40 REPEAT FAMILY 4 394 - -
Lsi11g01200 394 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Lsi11g01200 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 253 IPR001680 GO:0005515
Lsi11g01200 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 162 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01200 K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4 - csv:101207920 781.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01187 Lsi-Chr3:22294763 Lsi11g01200 Lsi-Chr11:20491454 2.67E-11 dispersed
Lsi05g01910 Lsi-Chr5:26292101 Lsi11g01200 Lsi-Chr11:20491454 1.52E-149 dispersed
Lsi06g00273 Lsi-Chr6:3068678 Lsi11g01200 Lsi-Chr11:20491454 3.30E-35 dispersed
Lsi06g00278 Lsi-Chr6:3169026 Lsi11g01200 Lsi-Chr11:20491454 1.47E-31 dispersed
Lsi11g01200 Lsi-Chr11:20491454 Lsi01g00940 Lsi-Chr1:7598731 1.51E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g163 . . . . . . . . Cmo19g00748 Cmo11g01740 . . . . Sed06g0381 Cpe04g00592 . Bhi05g01715 Tan02g0682 Cmetu01g1199 . Hepe02g0425 . . Cla02g00427 Cam02g0436 Cec02g0434 Cco02g0452 Clacu02g0437 Cmu02g0432 Cre02g0766 Cone12ag1232 . . . . Csa07g00100 . Cme01g01262 Blo04g00567 . . . Bpe15g00813 . Bma03g00609 . . . . Cma11g01381 Cma19g00739 . Car19g00568 . . . . . . . . . . . . . . . . Lsi11g01200 . Chy01g00681 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010062 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01200 Lsi_Chr11 FPKM 38.678528 37.634846 31.461748 31.572344 1.924977 0.90348 1.550223 1.562159 1.522342 1.178388