Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01201 ATGGGAGTTTTGGATCATTTGTCTGAGTATTTTGATTGCTCCTCTCATGGCTCTAAGCACAAGAAACGCAAGCAATTGCAGACAGTGGAGCTTAAAATTCGAATCGACTGCGAAGGATGTGAGAGGAAAGTGAAGAGAGCATTGGAAGGGATGAAGGGAGTGAAGCAAGTCGACGTCGACCGGAAAGCTAATAAAGCCACCGTTGTCGGATACGTTGAGCCGTCCAAAGTGGTGGCGCGTGTCGCTCACCGCACCGGCAAGAAGGCTGAGCTCTGGCCTTACGTTCCCTACGACGTCGTCGCACACCCCTACGCTCCGGGAGTGTACGACAAGAAAGCGCCGGCTGGGTACGTGCGAAAAGCCGATGACCCGAACGTGTACCAGCTGGCACGTGCGAGCTCCACCGAAGTTCGTTATACGACGGCGTTTAGTGACGAAAATCCCGCGGCTTGTGCTGTCATGTAA 465 53.55 MGVLDHLSEYFDCSSHGSKHKKRKQLQTVELKIRIDCEGCERKVKRALEGMKGVKQVDVDRKANKATVVGYVEPSKVVARVAHRTGKKAELWPYVPYDVVAHPYAPGVYDKKAPAGYVRKADDPNVYQLARASSTEVRYTTAFSDENPAACAVM 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20499496 20501164 - Lsi11G012010.1 Lsi11g01201 674368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01201 154 ProSiteProfiles Heavy-metal-associated domain profile. 35 91 IPR006121 GO:0046872
Lsi11g01201 154 CDD HMA 35 90 IPR006121 GO:0046872
Lsi11g01201 154 Gene3D - 14 93 - -
Lsi11g01201 154 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 154 IPR045181 GO:0046872
Lsi11g01201 154 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 2 154 - -
Lsi11g01201 154 Pfam Heavy-metal-associated domain 33 87 IPR006121 GO:0046872
Lsi11g01201 154 SUPERFAMILY HMA, heavy metal-associated domain 27 93 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01201 - - K10752 csv:101208405 313.923
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00581 Lsi-Chr1:4637937 Lsi11g01201 Lsi-Chr11:20499496 1.91E-62 dispersed
Lsi09g00648 Lsi-Chr9:7255361 Lsi11g01201 Lsi-Chr11:20499496 7.72E-50 dispersed
Lsi09g00956 Lsi-Chr9:12446771 Lsi11g01201 Lsi-Chr11:20499496 9.27E-42 dispersed
Lsi11g01201 Lsi-Chr11:20499496 Lsi04g00194 Lsi-Chr4:2054818 2.53E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g164 . Blo15g00381 Bda06g00476 . . Bpe12g00122 . . Cmo19g00749 Cmo11g01741 . . . . Sed05g2215 Cpe04g00593 Cpe15g00594 Bhi05g01712 Tan02g0681 Cmetu01g1192 . Hepe02g0424 . . Cla02g00426 Cam02g0435 Cec02g0433 Cco02g0451 Clacu02g0436 Cmu02g0431 Cre02g0765 Cone12ag1233 Cone8ag1286 . . . Csa07g00101 . Cme01g01260 Blo04g00568 . Bda15g01033 Bda14g00616 Bpe15g00812 . . . . . . Cma11g01380 Cma19g00740 . Car19g00569 . . . . . . . . . . . . . . . . Lsi11g01201 . Chy01g00680 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005751 3 1 2 0 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01201 Lsi_Chr11 FPKM 42.149899 47.814213 28.32193 29.939316 62.067902 57.300823 64.713463 28.442007 25.26601 29.119463