Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01205 ATGTCGTCGTCGAAGAAGATCGTCCTCAGGAGTTCCGACGGTGAAACCTTCGACGTCGACGAAATCGTCGCCGTCGAGTCTCAAACCATCAAACACATGATCGAGGACGATTGTGCCGATACTGTTATCCCCTTGCCCAATGTCACCAGTGGCATTCTTTCTAAGGTAATTGAATACTGTAAGAAGCATGTCGAGACAGATGATAAAGATCCTCAAGCCGCTTTTGAAACTCTTAAAACCTGGGACGCTGAATTTGTCAAGGTTGATCAGAATACCCTCTTTGATCTCATCTTGGCTGCTAACTATCTGAACATCAAAAGCCTTTTGGATCTCACATGCCAGACTGTGGCTGACATGATCAAAGGAAAGACTCCAGAGGAAATTAGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAA 468 44.87 MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20578346 20579998 + Lsi11G012050.1 Lsi11g01205 674372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01205 155 PIRSF SCF_Skp 1 155 IPR016897 GO:0006511
Lsi11g01205 155 PANTHER PUTATIVE-RELATED 1 155 - -
Lsi11g01205 155 PANTHER SKP1 1 155 IPR016897 GO:0006511
Lsi11g01205 155 CDD BTB_POZ_SKP1 6 120 - -
Lsi11g01205 155 Gene3D Potassium Channel Kv1.1; Chain A 1 155 IPR011333 -
Lsi11g01205 155 SMART skp1_3 4 105 IPR001232 GO:0006511
Lsi11g01205 155 SUPERFAMILY Skp1 dimerisation domain-like 78 153 IPR036296 GO:0006511
Lsi11g01205 155 SUPERFAMILY POZ domain 6 67 IPR011333 -
Lsi11g01205 155 Pfam Skp1 family, dimerisation domain 106 153 IPR016072 GO:0006511
Lsi11g01205 155 Pfam Skp1 family, tetramerisation domain 5 64 IPR016073 GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01205 K03094 SKP1, CBF3D; S-phase kinase-associated protein 1 - csv:101209382 290.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01086 Lsi-Chr7:16253155 Lsi11g01205 Lsi-Chr11:20578346 2.12E-82 dispersed
Lsi09g00090 Lsi-Chr9:805765 Lsi11g01205 Lsi-Chr11:20578346 5.14E-17 dispersed
Lsi11g01205 Lsi-Chr11:20578346 Lsi08g01298 Lsi-Chr8:21357823 8.45E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g170 . . . . . . . . . Cmo11g01745 . . . . . Cpe04g00597 . . . . . . . . Cla02g00422 Cam02g0431 Cec02g0429 Cco02g0447 Clacu02g0432 Cmu02g0427 Cre02g0761 . . . . . . . Cme01g01256 Blo04g00571 . . Bda14g00619 Bpe15g00809 . Bma03g00612 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01205 . Chy01g00676 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000912 2 2 2 2 2 3 4 3 3 2 3 3 3 3 3 3 3 2 5 3 2 3 3 3 2 3 3 4 3 4 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01205 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi11g01205 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi11g01205 Lsi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0