Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01207 ATGTCGAAAGAAGTGACGGAAGAGGGACAGTCCGGCCTGAGAAAGGACTACGTCGACCCACCGCCGGCGCCACTCATCGACGTCGCTGAACTCACACTCTGGTCCTTCTACAGAGCCCTAATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCATCGCCACCGTCATCGGCAACAACAAACAAACCAAAATGTGCGACGGCGTCGGAATCCTCGGAATCGCATGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGAATCTCCGGTGGTCATATTAATCCGGCGGTGACATTCGGGCTGTTTCTGGCGAGAAAAGTGTCGCTGATCAGAGCGGTGGGGTACATGGTGGCGCAGTGCGCCGGAGCCGTCGTCGGCGTTGGGTTAGTAAAGGCTTTCATGAAGCATGATTATAACAACAACGGCGGCGGAGCGAACGCCGTTAATTCAGGTTACAGTAGAGGAACAGCTCTTGGTGCTGAGATTATTGGAACTTTTGTCCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAGCGCGCGTGATTCTCACATCCCTGTTTTGGCCCCATTGCCGATTGGCTTCGCCGTGTTCATGGTTCATTTGGCAACCATTCCCATCACCGGAACCGGAATCAACCCGGCCAGAAGCTTCGGCGCCGCCGTTATTTACAACCGTGAAAAACCCTGGAATGACCACTGGATCTTTTGGGTCGGTCCGTTCGTCGGAGCTTTAGCGGCGGCGGCGTACCATCAGTACATTCTCCGAGCAGCCGCCATTAAAGCTTTGGGATCATTCCGCAGCAACCCAACAAACTGA 843 54.69 MSKEVTEEGQSGLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKMCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAVVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNREKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20597963 20600278 + Lsi11G012070.1 Lsi11g01207 674374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01207 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Lsi11g01207 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Lsi11g01207 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi11g01207 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Lsi11g01207 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi11g01207 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi11g01207 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi11g01207 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi11g01207 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi11g01207 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi11g01207 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi11g01207 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
Lsi11g01207 280 TIGRFAM MIP: MIP family channel proteins 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi11g01207 280 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01207 Lsi-Chr11:20597963 Lsi10g01268 Lsi-Chr10:16972498 1.35E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01207 K09872 - csv:101209627 543.502