Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01209 ATGGTGGGTGATTTTAATCATAGCATTGTCATCATGCAAAACCTGATGGAGAGACTAAGACCCCTTGTGGGTAGTAAAAGCTGGGACTACTGTGTTCTCTGGAAGTTGAGACAAGACCAGAGATGTATTGAATGGATGGATTGCTGCTGTGCTGGGACTGAGAATAATCAAAATGGTGGAGAAGAACTTGTGCTTCCTGTTTCTCAAGTCATTCCATGTAGGGACACCATATGTCCACACCCAAGAGCTAGTTCTTGTGAACTTCTTGCTCAGCTGCCATGTTCAGTGCCTCTAAATTCTGGGGTTTATATACAGACATTGCTATCAAATGAACCCAAGTGGCTACTCTTCTCCAATGGCACGGATTCAACTGCACTGGATGAAACAGTGGGGACCAGGGTATTAGTTCCATTTCCATTTGGACTAGTGGAGTTGTTCGTTGCTAAACATGCATCTGAAGATCAGCATGTCATAGATTTTGTTACAACTCAATGCAGCATTTCAATGGAGCAAGAAGCCATTGTTAATTCAAGCAACATGGAAACAAGTTTCTCTGTTGATGTAAATACAACAAATGGAATCCAATCAAAGCCATTTGTAGAAGACCAGAATGCTGTTCTAAGAGATCCTGAAAATCAATTTGAGGCACAAGGTTCAACCGCACCAACATTAGAAAACACCAATGTGGGTTATGACATCTCATTAGACAGAATCCGCCTCTGCAGTTCCCCTATGAACTTCTTGCAACAATTCAATTACAGCTCAGAAAACAGAAACAAGAACGAAATCTTCAATGAATGTTCACAGGATGCATTCCTTACTGATAAGCAGGGAAATCCTTACAAGTTTTCAGCCGAAAATGAGTTCCAAGAGGTGGATACAATGCAGGGGTCCTTAATGAACACATCAAACATTCATGTGCAGTTCAAGGAAAACACCGAATGCAAAGAGCAGCAAGGGGAAGAAAAGGACTTAGTCAAACATGAAAATGGAAGGTCTGATTCAATCTCTGATTGCAGTGATCGGATTGATGACGAAGATGATGCAATCGCAAAGTACCGCCGGAGGACTGGGCAGGGTCCTCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGAAAGAAACTAAATGAGCGGCTGTATAACCTACGAGCACTGGTTCCCAAAATTTCTAAGTTTCTGTGGATTTCTCAGATGGACAAAGCCTCAATACTTGGTGATGCAATTGATTTTGTGAAGGAGTTACAAAAGCAAGTCAAGGAACTCCAAGATGAACTGGAAGAACATTCAGATGATGAAAATGGTAAGACTGTAGTTTCAGGAAACAATGGAAACCAAAATAGTGTCCAGCTACCTGAGTTTCTGAGCCAAAATGATAAAGCTCAAAACAGTTACCATATGGGAATACTAGGAAGTGGAAGTCTTTTGAAGCAAAATCATCAGGACACTGAAGGTACTAGCAATGACAAGACTCAACAGATGGAGCCGCAAGTGGAAGTGGTACAGCTTGATGGGAACGAGTTCTTTGTAAAGGTTTTCTGCGAGAACAAGCGAGGTGGGTTTATGAGGCTAATGGAAGCCTTAAATGCTCTTGGCTTGGAAGTAACAAATGCAAATGTGACCAGTTATAGAGGCCTCGTATCTAATGTTTTCAAAGTTGGGGTAAGCAAACTTTTCATCTCTCAAACATTTGCATACTTTCTACAAATCCAAACAAATAAAAAGGACAGTGAAATGGTTCAAGCAGATGATGTAAGAGACTCTTTGCTGGAGATAACAAAGTACCCATGCAGAGGGTGGTCTGAAATAATCAAAGCACCAGAGTGCATTGGAAGCCGCATAGACTACCAGCCCCACCCCCATCAGCACCAGACCCAGCATTCATTTCAAGACAAAGCAATCAATTCACGCTTCCATCTCCTTGATGATTAA 1932 41.72 MVGDFNHSIVIMQNLMERLRPLVGSKSWDYCVLWKLRQDQRCIEWMDCCCAGTENNQNGGEELVLPVSQVIPCRDTICPHPRASSCELLAQLPCSVPLNSGVYIQTLLSNEPKWLLFSNGTDSTALDETVGTRVLVPFPFGLVELFVAKHASEDQHVIDFVTTQCSISMEQEAIVNSSNMETSFSVDVNTTNGIQSKPFVEDQNAVLRDPENQFEAQGSTAPTLENTNVGYDISLDRIRLCSSPMNFLQQFNYSSENRNKNEIFNECSQDAFLTDKQGNPYKFSAENEFQEVDTMQGSLMNTSNIHVQFKENTECKEQQGEEKDLVKHENGRSDSISDCSDRIDDEDDAIAKYRRRTGQGPQSKNLVAERKRRKKLNERLYNLRALVPKISKFLWISQMDKASILGDAIDFVKELQKQVKELQDELEEHSDDENGKTVVSGNNGNQNSVQLPEFLSQNDKAQNSYHMGILGSGSLLKQNHQDTEGTSNDKTQQMEPQVEVVQLDGNEFFVKVFCENKRGGFMRLMEALNALGLEVTNANVTSYRGLVSNVFKVGVSKLFISQTFAYFLQIQTNKKDSEMVQADDVRDSLLEITKYPCRGWSEIIKAPECIGSRIDYQPHPHQHQTQHSFQDKAINSRFHLLDD 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20620419 20630270 + Lsi11G012090.1 Lsi11g01209 674376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01209 643 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 98 600 - -
Lsi11g01209 643 Gene3D - 354 432 IPR036638 GO:0046983
Lsi11g01209 643 MobiDBLite consensus disorder prediction 314 342 - -
Lsi11g01209 643 Pfam Helix-loop-helix DNA-binding domain 367 416 IPR011598 GO:0046983
Lsi11g01209 643 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 15 162 IPR025610 -
Lsi11g01209 643 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 415 IPR011598 GO:0046983
Lsi11g01209 643 Coils Coil 405 432 - -
Lsi11g01209 643 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 429 IPR036638 GO:0046983
Lsi11g01209 643 MobiDBLite consensus disorder prediction 424 450 - -
Lsi11g01209 643 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 98 600 - -
Lsi11g01209 643 SMART finulus 366 421 IPR011598 GO:0046983
Lsi11g01209 643 CDD bHLH_AtAMS_like 363 437 - -
Lsi11g01209 643 MobiDBLite consensus disorder prediction 436 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01209 - - - cmos:111435148 1038.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00551 Lsi-Chr4:5051242 Lsi11g01209 Lsi-Chr11:20620419 8.28E-66 dispersed
Lsi05g00449 Lsi-Chr5:5739400 Lsi11g01209 Lsi-Chr11:20620419 3.73E-23 dispersed
Lsi08g01047 Lsi-Chr8:19041201 Lsi11g01209 Lsi-Chr11:20620419 5.65E-16 dispersed
Lsi11g01209 Lsi-Chr11:20620419 Lsi05g02130 Lsi-Chr5:28132824 3.60E-13 dispersed
Lsi11g01209 Lsi-Chr11:20620419 Lsi06g01209 Lsi-Chr6:22450517 9.90E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g174 . . . . . . . . Cmo19g00756 Cmo11g01748 . . . . Sed05g2587 Cpe04g00600 Cpe15g00600 Bhi05g01697 Tan02g0669 Cmetu01g2019 . Hepe02g0417 . . Cla02g00417 Cam02g0427 Cec02g0425 Cco02g0443 Clacu02g0428 Cmu02g0423 Cre02g0757 . . . . . . . . Blo04g00576 . . Bda14g00621 Bpe15g00806 . Bma03g00615 . . . . Cma11g01372 Cma19g00746 . Car19g00575 . . . . . . . . . . . . . . . . Lsi11g01209 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006375 1 1 2 2 1 1 2 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26197 PF14215 bHLH-MYC_N 1.40E-17 CL0161 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01209 Lsi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0