Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01213 ATGGAACGTTCCACAGTAAATCACAACCCAAATTCTTCACCACAGCGTATCCTCAAAAGGAACTGTGACCCAGCGGGCGGAAGCATCAGCAACAATCCAGTTTATACCAATCCCCTGGAGGCTGCAGCTGGTGAAGCAGAGCTCAAATTTTTTCGCGCTGTGGAGGGTAAATTCAACGTTTCTATGAAACTATTGCTTCCAGTTAGCGTCCGAGAATGGTGGCGAAGTGGAATGAATTGTTTGGCATTGAGAGCTGAAGGATTTAGAAGACCCAGTTTAGCTGCTGTATGTTGCATTGCTCGCTTTAGAGATATTATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCCGAGGGACAGAAAGTGAAGGAAACTGCCAATGGCGGTGATGCAGACATGAAGTCTGGAGAAAAACATCGAAGTCGAAGTTCGAAGTATAAGAGTGATGGTAAAGATGATGGGGAACATAGGTCGAAGCGTTCAAAATCAGAAGATGAGTCACGTGATCGAGATCGACATAGAGATAGGACTTCTTCCCGGCATCGGTCTAGGTCTAGAGAGAGAGACCGTGATAAGCATAGAAGCAGTAAAGAAAATAGGGGAAAAGAGGACAGAGAAGGGAATCAGGAAGAGAGAAGGAGTAAGGACAGGGATGTGGACAGAGATAAAGAACGTTCTCACGATCGTGATAGACGGGGTAGAGATGGTGAAAGGAATAGGGAAAGAGAACGGCCACGTCGAAGTAGAAGTCGGTCAGAAAGACATCGCAGTGATCAGAATGAAGGCATAAGAGAGAGGAGCCGAGATAATGAACTCAGAGAAAGAGAAAAGGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGAAATGCTGGTGAGGGAGTTCTAATAACAAAGGATGTCTCTGACCAATGTTTTTTCCCACCCCACAGAAGATATAAAGAGAAAAAGGAAGAAGGAGCTGAACCAGAAGCTGATCCTGAAAGGGATCAGAGAACTGTATTTGCCTATCAGATAAGTTTAAAGGCAACTGAAAGAGATGTGTACGAATTCTTCTCCAGGGCTGGTAAGGTTCTAGATAATCATGAGACTTACTCTGGGGTGTGGGGGAAGGTGGGGTTCTCAACTCGACAGGTAAGGCTTGTCTCTGAAGTTATTGAGACCATAGGGACTGGGATTTGGGAATTTGGGGTCCAA 1209 45.08 MERSTVNHNPNSSPQRILKRNCDPAGGSISNNPVYTNPLEAAAGEAELKFFRAVEGKFNVSMKLLLPVSVREWWRSGMNCLALRAEGFRRPSLAAVCCIARFRDIMDFDEYDYLEKTVENPEGQKVKETANGGDADMKSGEKHRSRSSKYKSDGKDDGEHRSKRSKSEDESRDRDRHRDRTSSRHRSRSRERDRDKHRSSKENRGKEDREGNQEERRSKDRDVDRDKERSHDRDRRGRDGERNRERERPRRSRSRSERHRSDQNEGIRERSRDNELREREKERESRERGRDGRNAGEGVLITKDVSDQCFFPPHRRYKEKKEEGAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVLDNHETYSGVWGKVGFSTRQVRLVSEVIETIGTGIWEFGVQ 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20672030 20681053 - Lsi11G012130.1 Lsi11g01213 674380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01213 403 PANTHER CC1-LIKE SPLICING FACTOR 106 364 - -
Lsi11g01213 403 MobiDBLite consensus disorder prediction 122 294 - -
Lsi11g01213 403 SUPERFAMILY RNA-binding domain, RBD 314 366 IPR035979 GO:0003676
Lsi11g01213 403 MobiDBLite consensus disorder prediction 122 333 - -
Lsi11g01213 403 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 106 364 - -
Lsi11g01213 403 MobiDBLite consensus disorder prediction 309 333 - -
Lsi11g01213 403 Gene3D - 261 387 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01213 K13091 RBM23_39; RNA-binding protein 23/39 - csv:101209872 276.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01213 Lsi-Chr11:20672030 Lsi01g01118 Lsi-Chr1:9237274 1.51E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g184 . . . . . . . . Cmo19g00761 . . . . . . . Cpe15g00604 Bhi05g01690 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00295 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01213 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018631 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01213 Lsi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.041048 0.0
Lsi11g01213 Lsi_Chr00 FPKM 0.193842 0.0 0.093671 0.0 0.0 0.0 0.0 0.0 0.145117 0.0
Lsi11g01213 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0