Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01215 ATGTTATCAGAGTTGATGAACTTTTTGAGGGCCTGTTTCCAGCCGAGCTCCGATCGGTATGTGGCCGGGGAAATCAGGGGGCGGCAGGACGGGTTGTTATGGTACAAAGATAGTGGACAACACTTGAATGGCGAGTTTTCAATGTCTGTGATTCAGGCCAACAATTTGCTTGAAGATCAGAGCCAGATTGAGTCTGGCAGTTTGAGCTTACACGAGTCTGGCCCCAAAGGAACATTTGTTGGTGTGTATGATGGCCATGGAGGCCCTGAGACTTCTCGGTATATCTGTGATCATCTATTCCAGCATCTCAAGAGATTTACTTCTGAGCAAGATTTAATGTCCTCGGATGTAATACGCAAGGCGTTCCAAGCGACGGAGGAGGGTTTTTTTTCAATAGTTCGAAGTCAATGGTCAACAAATCCTCAAATTGCAGCTGTTGGTTCATGCTGTCTAGTTGGTGTAATTTGTGATGGGACTCTCTATGTTGCAAATCTAGGTGATTCACGTGCTGTTTTGGGTAGAGTAGTGAAGGCAACTGGCGAGGTTCTAGCCATTCAGTTATCAACAGAGCACAATGTTTCTAACGAGTCGGTGAGGCAAGAGCTGCAGTCTGTGCACCCTGATGACCCACAAGTTGTGGTTTTAAGGCATAACGTTTGGAGAGTAAAGGGCATAATACAGATTTCAAGATCTATAGGCGATGTATACTTGAAAAAATCTGAGTTCAATAGAGAACCGTTGTACGCAAAGTTTCGAGTTCAAAAACCCTTCAAAAAGCCATTTTTGAGCTCTGAACCAGCCATTTCTGAGATCCAGTTGAAGCCAGATGATCAATTTGTGATATTTGCATCAGATGGGTTGTGGGAGCACCTTAGCAATCAGGAAGCAGTCGATATAGTTCATAGCAACGCTCAAAGTGGAAGTGCTAGAAGACTGGTCAGAGCTGCTCTTCAAGTAGCTGCAAAGAAAAGAGAAATGAGGTACTCAGATTTGAAGAAGATTGGCCGTGGCGTTCGTCGCCATTTCCACGACGACATCACCGTGGTGGTTGTGTTTCTCGATACCAATCTTCTCTTCAGAGCCAGTTCCACAAAGAGCTTGAGTGTCTCACTACGAGGCGGTGGAGTCAACCGGCTTCCTAACTCTTTATCCCCCGTTACTACGCCCGTGTAG 1173 45.69 MLSELMNFLRACFQPSSDRYVAGEIRGRQDGLLWYKDSGQHLNGEFSMSVIQANNLLEDQSQIESGSLSLHESGPKGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQDLMSSDVIRKAFQATEEGFFSIVRSQWSTNPQIAAVGSCCLVGVICDGTLYVANLGDSRAVLGRVVKATGEVLAIQLSTEHNVSNESVRQELQSVHPDDPQVVVLRHNVWRVKGIIQISRSIGDVYLKKSEFNREPLYAKFRVQKPFKKPFLSSEPAISEIQLKPDDQFVIFASDGLWEHLSNQEAVDIVHSNAQSGSARRLVRAALQVAAKKREMRYSDLKKIGRGVRRHFHDDITVVVVFLDTNLLFRASSTKSLSVSLRGGGVNRLPNSLSPVTTPV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20727281 20731989 + Lsi11G012150.1 Lsi11g01215 674382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01215 390 SMART PP2C_4 37 351 IPR001932 -
Lsi11g01215 390 Pfam Protein phosphatase 2C 72 319 IPR001932 -
Lsi11g01215 390 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 380 - -
Lsi11g01215 390 Gene3D - 32 360 IPR036457 -
Lsi11g01215 390 CDD PP2Cc 46 353 IPR001932 -
Lsi11g01215 390 ProSiteProfiles PPM-type phosphatase domain profile. 42 353 IPR001932 -
Lsi11g01215 390 PANTHER ALPHABET, ISOFORM E-RELATED 5 380 - -
Lsi11g01215 390 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Lsi11g01215 390 SUPERFAMILY PP2C-like 49 354 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00506 Lsi11g01215 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00567 Lsi-Chr1:4537651 Lsi11g01215 Lsi-Chr11:20727281 0 dispersed
Lsi09g01500 Lsi-Chr9:23028473 Lsi11g01215 Lsi-Chr11:20727281 1.27E-149 dispersed
Lsi10g00506 Lsi-Chr10:7237062 Lsi11g01215 Lsi-Chr11:20727281 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01215 - K01102 csv:101211601 730.709