Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01217 ATGGGTGTGGAACAAAACAATCACGATGCAGAGGAGGGAACGCTGGAGATTGGAATGGAATATAGAACAGTCTCTGGAGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGATCAACCAGGCGTGGTCAAGTCCTGGAAGTTGACGGGGAGAAAGCTGTTGTTCAGGTATTCGAAGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACTGGAGAGGTTTTGAAAACTCCAGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGCCCTCCTATCTTGCCTGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAGAGAACTTATCCTGAGGAGATGATACAGACTGGAATTTCTACCATTGATGTCATGAATTCCATTGCTAGAGGGCAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATTTGTCGTCAGGCTGGCTTGGTTAAGAGGTTGGAGAAATCCAACGATCTTCTTGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCTGCTATGGGTGTTAACATGGAGACTGCTCAGTTTTTCAAACGTGATTTTGAAGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAACGTATCATCACTCCTCGTATTGCTCTCACTACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTTCGTGAGGTGTCTGCTGCAAGAGAGGAAGTACCTGGAAGGCGTGGATACCCTGGTTATATGTATACTGATCTTGCTACAATCTATGAACGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAGATCCCAATCCTCACCATGCCAAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACCGAGGGACAGATCTACATCGACAGGCAACTCTACAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCATTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGAATGACTCGCAGGGATCATGCTGATGTATCGAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCCATGAAAGCTGTGGTCGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCTCTCAAGGAGCTTACGATACTCGAAACATTTTCCAATCACTTGACCTGGCATGGACACTGCTTCGTATTTTCCCTCGTGAACTTCTGCACCGTATACCTGCAAAGACTCTTGATCTGTTTTACAGCCGTGAATCTGCAAATTGA 1467 43.97 MGVEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20747670 20753340 + Lsi11G012170.1 Lsi11g01217 674384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01217 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Lsi11g01217 488 CDD V_A-ATPase_B 92 379 - -
Lsi11g01217 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Lsi11g01217 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Lsi11g01217 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 2 488 - -
Lsi11g01217 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 2 488 IPR022879 -
Lsi11g01217 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Lsi11g01217 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Lsi11g01217 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Lsi11g01217 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Lsi11g01217 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Lsi11g01217 488 Gene3D - 29 488 - -
Lsi11g01217 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01217 K02147 ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B - csv:101211838 962.985
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01217 Lsi-Chr11:20747670 Lsi09g00638 Lsi-Chr9:7054782 8.33E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g198 . . . . . Bpe12g00130 . . Cmo19g00765 Cmo11g01753 . . . . Sed05g2251 Cpe04g00605 Cpe15g00607 Bhi05g01684 Tan02g0657 Cmetu10g1323 . . . . Cla02g00408 Cam02g0414 Cec02g0413 Cco02g0431 Clacu02g0417 Cmu02g0413 Cre02g0748 Cone12ag1245 . . . . Csa07g00121 . Cme01g01238 Blo04g00583 Blo13g00496 Bda15g01024 Bda14g00625 Bpe15g00802 . Bma03g00617 Bma08g00610 . . . Cma11g01365 Cma19g00752 . Car19g00587 . . . . . . . . . . . . . . . . Lsi11g01217 . Chy01g00662 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01538 . 1 1021 Primary Pumps ATPases(2) AT1G10130 80.4 0.0e+00 1590.9
Lsi10g01308 . 1 808 Primary Pumps ATPases(2) AT2G28520 73.4 0.0e+00 1209.9
Lsi08g01352 . 1 800 Primary Pumps ATPases(2) AT2G28520 56.3 1.9e-260 895.6
Lsi11g01128 . 10 745 Primary Pumps ATPases(2) AT2G28520 54.5 3.4e-225 778.5
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT2G21410 66.4 0.0e+00 1081.6
Lsi11g01128 . 6 744 Primary Pumps ATPases(2) AT2G21410 64.9 2.4e-282 968.4
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT2G21410 56.1 2.2e-264 908.7
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT4G39080 66.4 4.5e-313 1070.5
Lsi11g01128 . 8 745 Primary Pumps ATPases(2) AT4G39080 66.8 3.9e-285 977.6
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT4G39080 57.0 3.2e-263 904.8
Lsi04g02391 . 32 170 Primary Pumps ATPases(2) AT4G34720 100.0 1.6e-61 232.3
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G34720 80.6 1.3e-55 212.6
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G34720 71.6 2.7e-53 204.9
Lsi08g01343 . 2 197 Primary Pumps ATPases(2) AT1G75630 81.2 1.5e-68 256.1
Lsi08g01342 . 2 217 Primary Pumps ATPases(2) AT1G75630 77.3 9.4e-68 253.4
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT1G75630 79.1 1.7e-53 206.1
Lsi08g01343 . 3 197 Primary Pumps ATPases(2) AT2G16510 83.1 4.1e-69 257.7
Lsi08g01342 . 3 217 Primary Pumps ATPases(2) AT2G16510 74.9 8.6e-67 250.0
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-60 228.8
Lsi08g01342 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Lsi08g01343 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Lsi04g02391 . 33 127 Primary Pumps ATPases(2) AT1G19910 98.9 4.8e-38 154.1
Lsi08g01161 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.9e-70 261.5
Lsi04g02151 . 4 187 Primary Pumps ATPases(2) AT2G25610 79.3 1.7e-68 256.1
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT4G38920 100.0 1.7e-60 228.8
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G38920 80.6 3.7e-55 211.1
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G38920 71.6 7.7e-53 203.4
Lsi08g01161 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 5.1e-72 267.7
Lsi04g02151 . 11 187 Primary Pumps ATPases(2) AT4G32530 76.5 8.7e-72 266.9
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07810 78.1 0.0e+00 1651.7
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07670 77.8 0.0e+00 1651.7
Lsi08g01538 . 1 1021 Primary Pumps ATPases(2) AT1G10130 80.4 0.0e+00 1590.9
Lsi02g01380 . 22 1079 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1302.3
Lsi06g00109 . 1 145 Primary Pumps ATPases(2) AT4G02620 73.8 3.8e-54 207.6
Lsi11g01217 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 2.0e-268 921.4
Lsi09g00869 . 105 471 Primary Pumps ATPases(2) AT1G12840 76.8 9.1e-157 550.1
Lsi11g01651 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.3e-117 419.5
Lsi03g01626 . 74 516 Primary Pumps ATPases(2) AT3G42050 80.1 1.5e-203 705.7
Lsi08g01343 . 3 197 Primary Pumps ATPases(2) AT2G16510 83.1 4.1e-69 257.7
Lsi08g01342 . 3 217 Primary Pumps ATPases(2) AT2G16510 74.9 8.6e-67 250.0
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-60 228.8
Lsi11g01217 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Lsi07g01500 . 1 185 Primary Pumps ATPases(2) AT1G64200 74.0 7.7e-67 250.4
Lsi11g01217 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 4.1e-266 913.7
Lsi10g01308 . 1 808 Primary Pumps ATPases(2) AT2G28520 73.4 0.0e+00 1209.9
Lsi08g01352 . 1 800 Primary Pumps ATPases(2) AT2G28520 56.3 1.9e-260 895.6
Lsi11g01128 . 10 745 Primary Pumps ATPases(2) AT2G28520 54.5 3.4e-225 778.5
Lsi03g01466 . 2 197 Primary Pumps ATPases(2) AT3G28715 81.5 9.1e-95 344.0
Lsi07g01500 . 1 263 Primary Pumps ATPases(2) AT4G11150 64.8 2.1e-79 292.4
Lsi02g02834 . 1 626 Primary Pumps ATPases(2) AT1G78900 90.2 0.0e+00 1139.4
Lsi11g01217 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 2.0e-268 921.4
Lsi11g01217 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Lsi11g01217 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 4.1e-266 913.7
Lsi09g00869 . 105 471 Primary Pumps ATPases(2) AT1G12840 76.8 9.1e-157 550.1
Lsi11g01651 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.3e-117 419.5
Lsi07g01500 . 1 263 Primary Pumps ATPases(2) AT4G11150 64.8 2.1e-79 292.4
Lsi07g01500 . 1 263 Primary Pumps ATPases(2) AT3G08560 58.7 2.6e-69 258.8
Lsi07g01500 . 1 185 Primary Pumps ATPases(2) AT1G64200 74.0 7.7e-67 250.4
Lsi06g00109 . 1 145 Primary Pumps ATPases(2) AT4G02620 73.8 3.8e-54 207.6
Lsi03g01626 . 74 516 Primary Pumps ATPases(2) AT3G42050 80.1 1.5e-203 705.7
Lsi10g01308 . 1 808 Primary Pumps ATPases(2) AT2G28520 73.4 0.0e+00 1209.9
Lsi08g01352 . 1 800 Primary Pumps ATPases(2) AT2G28520 56.3 1.9e-260 895.6
Lsi11g01128 . 10 745 Primary Pumps ATPases(2) AT2G28520 54.5 3.4e-225 778.5
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT2G21410 66.4 0.0e+00 1081.6
Lsi11g01128 . 6 744 Primary Pumps ATPases(2) AT2G21410 64.9 2.4e-282 968.4
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT2G21410 56.1 2.2e-264 908.7
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT4G39080 66.4 4.5e-313 1070.5
Lsi11g01128 . 8 745 Primary Pumps ATPases(2) AT4G39080 66.8 3.9e-285 977.6
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT4G39080 57.0 3.2e-263 904.8
Lsi04g02391 . 32 170 Primary Pumps ATPases(2) AT4G34720 100.0 1.6e-61 232.3
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G34720 80.6 1.3e-55 212.6
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G34720 71.6 2.7e-53 204.9
Lsi08g01342 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Lsi08g01343 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Lsi04g02391 . 33 127 Primary Pumps ATPases(2) AT1G19910 98.9 4.8e-38 154.1
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT4G38920 100.0 1.7e-60 228.8
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G38920 80.6 3.7e-55 211.1
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G38920 71.6 7.7e-53 203.4
Lsi08g01343 . 2 197 Primary Pumps ATPases(2) AT1G75630 81.2 1.5e-68 256.1
Lsi08g01342 . 2 217 Primary Pumps ATPases(2) AT1G75630 77.3 9.4e-68 253.4
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT1G75630 79.1 1.7e-53 206.1
Lsi08g01343 . 3 197 Primary Pumps ATPases(2) AT2G16510 83.1 4.1e-69 257.7
Lsi08g01342 . 3 217 Primary Pumps ATPases(2) AT2G16510 74.9 8.6e-67 250.0
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-60 228.8
Lsi08g01161 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 5.1e-72 267.7
Lsi04g02151 . 11 187 Primary Pumps ATPases(2) AT4G32530 76.5 8.7e-72 266.9
Lsi08g01161 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.9e-70 261.5
Lsi04g02151 . 4 187 Primary Pumps ATPases(2) AT2G25610 79.3 1.7e-68 256.1
Lsi03g01466 . 2 197 Primary Pumps ATPases(2) AT3G28710 85.6 9.3e-103 370.5
Lsi03g01466 . 2 197 Primary Pumps ATPases(2) AT3G28715 81.5 9.1e-95 344.0
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07810 78.1 0.0e+00 1651.7
Lsi02g01380 . 22 1079 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1302.3
Lsi08g01538 . 1 1021 Primary Pumps ATPases(2) AT1G10130 80.4 0.0e+00 1590.9
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07670 77.8 0.0e+00 1651.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003683 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 3 1 1 4 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01217 Lsi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0