Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01217 ATGGGTGTGGAACAAAACAATCACGATGCAGAGGAGGGAACGCTGGAGATTGGAATGGAATATAGAACAGTCTCTGGAGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGATCAACCAGGCGTGGTCAAGTCCTGGAAGTTGACGGGGAGAAAGCTGTTGTTCAGGTATTCGAAGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACTGGAGAGGTTTTGAAAACTCCAGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGCCCTCCTATCTTGCCTGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAGAGAACTTATCCTGAGGAGATGATACAGACTGGAATTTCTACCATTGATGTCATGAATTCCATTGCTAGAGGGCAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATTTGTCGTCAGGCTGGCTTGGTTAAGAGGTTGGAGAAATCCAACGATCTTCTTGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCTGCTATGGGTGTTAACATGGAGACTGCTCAGTTTTTCAAACGTGATTTTGAAGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAACGTATCATCACTCCTCGTATTGCTCTCACTACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTTCGTGAGGTGTCTGCTGCAAGAGAGGAAGTACCTGGAAGGCGTGGATACCCTGGTTATATGTATACTGATCTTGCTACAATCTATGAACGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAGATCCCAATCCTCACCATGCCAAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACCGAGGGACAGATCTACATCGACAGGCAACTCTACAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCATTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGAATGACTCGCAGGGATCATGCTGATGTATCGAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCCATGAAAGCTGTGGTCGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCTCTCAAGGAGCTTACGATACTCGAAACATTTTCCAATCACTTGACCTGGCATGGACACTGCTTCGTATTTTCCCTCGTGAACTTCTGCACCGTATACCTGCAAAGACTCTTGATCTGTTTTACAGCCGTGAATCTGCAAATTGA 1467 43.97 MGVEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20747670 20753340 + Lsi11G012170.1 Lsi11g01217 674384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01217 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Lsi11g01217 488 CDD V_A-ATPase_B 92 379 - -
Lsi11g01217 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Lsi11g01217 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Lsi11g01217 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 2 488 - -
Lsi11g01217 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 2 488 IPR022879 -
Lsi11g01217 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Lsi11g01217 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Lsi11g01217 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Lsi11g01217 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Lsi11g01217 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Lsi11g01217 488 Gene3D - 29 488 - -
Lsi11g01217 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01217 Lsi-Chr11:20747670 Lsi09g00638 Lsi-Chr9:7054782 8.33E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01217 K02147 - csv:101211838 962.985