Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01221 ATGAACAAGAGGGCCAGAATTGATGATTCCAATAAGGCAGTGGTCAATGTCTGGAAGCGGGAGGTTGGCGAGCTTTCCACTAGGAATTTTGCCCACCGTCTTGGTGCGTTGGAGGATCTCGTGCTCCGACTTGATCTTTACAGGAAATTGGAGAGGCATAAAGGTTGTGTGAACACCGTGAGCTTTAATGCTGCTGGTGACATTTTAGTGTCAGGCTCTGATGATAGGCGGGTGATTCTCTGGAATTGGGAAACCGGGAATGTTAAGCTCTCTTTTCAGTCTGGTCACAATAACAATGTTTTTCAAGCAAAAATCATGCCTTACACGGATGACAGAAGCATTGTGACTTGTGCTGCGGATGGGCAGGTGAGACATGCTCAGATTCTGAATAGTGGGCGTGTGGAAACTGCACTACTTGGCAGTCATCTAGGGCGAGCTCATAAGTTGGCCATTGAACCTGGTAGCCCTTATATGTTCTATACTTGTGGTGAAGATGGATTGGTGCAACGTTTTGATCTAAGAACTGGGGCTGCCGTTGAGCTGTTCACTTGCCAATCAGTTGACAATAAGGCAGGTTACATGTCATCGATTCAGCTAAATGCAATTGCTATTGATCCCAGAAATCCGAATCTCTTTGTTGTTGCTGGTTCAGATGAGTACGCACGGTTGTATGATATTCGCAAGTCTGGGGAGGATGGATCAACCGATTTTGGTCAACTGGTAGACTGCTATTGTCCCCCTCACTTGATTGGCGATGAGCAAGTGGGAATAACAGGTCTAGCCTTCTCAGAGCTGAGTGAGCTCCTTGTCTCGTACAATGATGAATCCATTTATCTCTTTAATAGGGATATGGGTTTGGGCCCAAACCCAAATCCAGCGTCTCCAGTATCTCTGAGTAGTGATACAAGTGAAATGGGAATTGAAAATGTTGAGAATGGTAGTCCACAAGTTTATAAAGGACATAGAAACTGTGAGACAGTGAAAGGTGTCAATTTTTTTGGACCTAAATGTGAGTATGTCATCAGTGGTTCTGATTGTGGCAGAATATTTATCTGGAGGAAAAAGGGTGGAGAGCTAATTCGAGTCATGGAAGCTGATGAGGATGTCGTGAACTGCATCGAGCCCCATCCTCATATGACCATGCTTGCTAGTAGTGGAATTGAAAGTGATGTCAAGATATGGACTCCAAAGGCCCTTGAAAGGGCTACTCTCCCTGAGAAAATTGAACAGAAACCAAAGCCTAGAGGATGGATGCACCGCTTAGCGTTACCGGAGGAACTGATGATGCAACTGTTTTCACTGCGAAGACAGAATTCGAGCCCTGAACGTGGAAGGGAACCTCCTACTGTAAGTAGGGAAATTTTAGAGTTGATAATGACATTCAGCAATGGCAACAGCGATGATTCTTCAGATTACAATGGTGGTGACACTGCTGAAGATGATTGA 1446 45.02 MNKRARIDDSNKAVVNVWKREVGELSTRNFAHRLGALEDLVLRLDLYRKLERHKGCVNTVSFNAAGDILVSGSDDRRVILWNWETGNVKLSFQSGHNNNVFQAKIMPYTDDRSIVTCAADGQVRHAQILNSGRVETALLGSHLGRAHKLAIEPGSPYMFYTCGEDGLVQRFDLRTGAAVELFTCQSVDNKAGYMSSIQLNAIAIDPRNPNLFVVAGSDEYARLYDIRKSGEDGSTDFGQLVDCYCPPHLIGDEQVGITGLAFSELSELLVSYNDESIYLFNRDMGLGPNPNPASPVSLSSDTSEMGIENVENGSPQVYKGHRNCETVKGVNFFGPKCEYVISGSDCGRIFIWRKKGGELIRVMEADEDVVNCIEPHPHMTMLASSGIESDVKIWTPKALERATLPEKIEQKPKPRGWMHRLALPEELMMQLFSLRRQNSSPERGREPPTVSREILELIMTFSNGNSDDSSDYNGGDTAEDD 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20800263 20807055 - Lsi11G012210.1 Lsi11g01221 674388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01221 481 MobiDBLite consensus disorder prediction 460 481 - -
Lsi11g01221 481 Gene3D - 39 397 IPR015943 GO:0005515
Lsi11g01221 481 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 8 460 - -
Lsi11g01221 481 Pfam WD domain, G-beta repeat 48 82 IPR001680 GO:0005515
Lsi11g01221 481 Pfam WD domain, G-beta repeat 316 352 IPR001680 GO:0005515
Lsi11g01221 481 SUPERFAMILY WD40 repeat-like 42 394 IPR036322 GO:0005515
Lsi11g01221 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515
Lsi11g01221 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 82 - -
Lsi11g01221 481 SMART WD40_4 85 127 IPR001680 GO:0005515
Lsi11g01221 481 SMART WD40_4 356 395 IPR001680 GO:0005515
Lsi11g01221 481 SMART WD40_4 311 353 IPR001680 GO:0005515
Lsi11g01221 481 SMART WD40_4 177 225 IPR001680 GO:0005515
Lsi11g01221 481 SMART WD40_4 242 281 IPR001680 GO:0005515
Lsi11g01221 481 SMART WD40_4 43 82 IPR001680 GO:0005515
Lsi11g01221 481 SMART WD40_4 132 172 IPR001680 GO:0005515
Lsi11g01221 481 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 8 460 IPR045151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01221 K11804 DCAF8; DDB1- and CUL4-associated factor 8 - csv:101212571 917.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01309 Lsi-Chr10:17287546 Lsi11g01221 Lsi-Chr11:20800263 2.01E-34 dispersed
Lsi10g01310 Lsi-Chr10:17289051 Lsi11g01221 Lsi-Chr11:20800263 1.06E-109 dispersed
Lsi11g01221 Lsi-Chr11:20800263 Lsi04g02270 Lsi-Chr4:29715150 3.00E-20 dispersed
Lsi11g01221 Lsi-Chr11:20800263 Lsi02g02285 Lsi-Chr2:29422484 2.01E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01221 Lsi_Chr11 FPKM 31.501568 34.499786 23.179613 25.370796 18.473249 18.079363 20.137674 29.341652 26.195381 28.373699