Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01222 ATGCCCATTTTGGTGATGATTCGCCGGAGAATTTGGTCTACGAAGACCTTTCACACAGCTGCTTTAACAATCTTCAATGCTCAGAAGCATGTTCATCGTCGTCCAGTTATATTCAACATTGCTTTTCAGTTGAAACAGACTTGTTTCTCTTCTTCTTCGAAAGCCAACAGTTTTCAGGTTCCGGAATTCTATTCTCTGAACAAGAAGATGTCTTACTTGATTCGAACAGGCCGAATAAGTGAAGCGAGGGAACTGTTCGATAGCATTAAACATCGGAATACGATCACTTGGAACACGATGATCACTGGGTATGTGAAAAGGAGAGAGATGTTGAAAGCATGCCAATTGTTCGACGAAATGCCTAACAGAGACATTGTGTCGTGGAACTTAATGTTATCAGGTTATATATCTTGTGGTGGAAAGTTCATTGAGAGGGGACGGAATATGTTCGATAAAATGCCAGAAAGAGATTGTGTTTCATGGAACACGATGCTGAGTGGGTATGCTAAGAATGGGATGATGGATAAAGCAGAAGAGCTTTTCAATTACATGCCTGAGCGTAATGTTGTCTCATGGAATGCCATGGTTTCTGGTTATTTAATGAATGGTTATGTGGAGAAAGCTATTGAGTTCTTTAAGATGATGCCAGAACGAGACTCTGCTTCTCTTAGTGCACTGGTTTCTGGTCTGATTCAGAATGACAAGTTGGTTGAAGCTGAAAGGATTCTGCTTCAATATGGTGGGAATGATGGTAGAGGGGACTTAGTTCATGCTTATAATACTTTGATTGCTGGATATGGTCAGAAAGGAATGACCCATGAAGCCCGGAAGCTGTTTGATCGCATCCCTTCGTATCGTGATCGAGAGGAAGATGAATGTGGAAACTCTGGGAGGAATGTGGTTTCATGGAACTCTATGATAATGAGCTATGTGAGAGCTGGTAACATAGTCTCTGCCCGAGAACTATTCGATAAAATGGTTGAGCGAGATACTTTTTCATGGAACACTATGATCAGTGGCTATGTCCAGATCTTGGATATGAAAGAGGCCTCAAATCTTTTCGGTAGAATGCCGGAGCCCGATACCCTTTCTTGGAATATGATGATATCTGGGTTGGCTGAGATAGGTAGTTTGGAACTAGCTCATGACTTGTTCAAGAGGATGCCAGCGAAAAGCCTTGTCTCATGGAATTCAATGATATCTGGCTGTGAGAAAAATGAAGACTATAAAGGAGCAATTAACATCTTTTTGCAGATGCAAGTTGAAGGTAAAAAACCAGATAGGCACACTTTATCATCAATTCTAAGTGCTTGTGCTGGGTTGGTAGATCTGGCTTTGGGAACTCAGATTCATCAACTAGTTACAAAAGCCTTTATTCCAGATTTGCCCATAAACAACTCTCTTATTACAATGTATTCAAGATGTGGAGCAATCGTCGAGGCACGGACTGTTTTTGATGAAATGAATCTGCAGAGAGACGTCATTTCTTGGAATGCGATGATTGGCGGATATGCTTCTCATGGCTTTGCAACAGAGGCTCTTCAGCTTTTTGAATTGATGAAACAATGTAATGTGCAGCCCTCTTATATCACATTCATTTCTGTTCTGAATGCTTGTGCTCATGCTGGATTGATCGAGGAAGGAAGGAGAGAATTCAACTCCATGGTTAACACGCACGGTCTCGAGCCACGAGTCGAACACTATGCTGCTCTCGTCGACATCATCGGTCGACAGGGGCAACTTGAAGAAGCGATGAGTTTGATCAATAGCATGCCATGTGAACCGGATAAAGCAGTGTGGGGTTCATTACTGGGTGCTTGTAGGGTGCATAACAATGTTGAGATGGCTCGAGCAGCCGCGGAAGCGTTAATGAAGCTCGAACCCGAAAGCTCAGCTCCATACGTGTTGCTATATAATATGCATGCCGATATGGGACGATGGGATGATGCTGCTGAAGTGAGAACGATGATGGAGAAGAACAATGTTCAAAAGGAAGCTGGATATAGTCGGGTGGATTCTTATTGCTACTAA 2031 42.59 MPILVMIRRRIWSTKTFHTAALTIFNAQKHVHRRPVIFNIAFQLKQTCFSSSSKANSFQVPEFYSLNKKMSYLIRTGRISEARELFDSIKHRNTITWNTMITGYVKRREMLKACQLFDEMPNRDIVSWNLMLSGYISCGGKFIERGRNMFDKMPERDCVSWNTMLSGYAKNGMMDKAEELFNYMPERNVVSWNAMVSGYLMNGYVEKAIEFFKMMPERDSASLSALVSGLIQNDKLVEAERILLQYGGNDGRGDLVHAYNTLIAGYGQKGMTHEARKLFDRIPSYRDREEDECGNSGRNVVSWNSMIMSYVRAGNIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFGRMPEPDTLSWNMMISGLAEIGSLELAHDLFKRMPAKSLVSWNSMISGCEKNEDYKGAINIFLQMQVEGKKPDRHTLSSILSACAGLVDLALGTQIHQLVTKAFIPDLPINNSLITMYSRCGAIVEARTVFDEMNLQRDVISWNAMIGGYASHGFATEALQLFELMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGLEPRVEHYAALVDIIGRQGQLEEAMSLINSMPCEPDKAVWGSLLGACRVHNNVEMARAAAEALMKLEPESSAPYVLLYNMHADMGRWDDAAEVRTMMEKNNVQKEAGYSRVDSYCY 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20810925 20812955 - Lsi11G012220.1 Lsi11g01222 674389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01222 676 Pfam PPR repeat family 92 124 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat family 492 540 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat family 392 439 IPR002885 -
Lsi11g01222 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Lsi11g01222 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat 301 329 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat 466 488 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat 364 391 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat 332 358 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat 159 189 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat 258 283 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat 568 592 IPR002885 -
Lsi11g01222 676 Pfam PPR repeat 190 218 IPR002885 -
Lsi11g01222 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Lsi11g01222 676 Gene3D Tetratricopeptide repeat domain 327 457 IPR011990 GO:0005515
Lsi11g01222 676 Gene3D Tetratricopeptide repeat domain 465 673 IPR011990 GO:0005515
Lsi11g01222 676 Gene3D Tetratricopeptide repeat domain 28 251 IPR011990 GO:0005515
Lsi11g01222 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 391 IPR002885 -
Lsi11g01222 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Lsi11g01222 676 PANTHER OS06G0228900 PROTEIN 63 672 - -
Lsi11g01222 676 Gene3D Tetratricopeptide repeat domain 252 326 IPR011990 GO:0005515
Lsi11g01222 676 PANTHER OS07G0578800 PROTEIN-RELATED 63 672 IPR045215 GO:0003723|GO:0009451
Lsi11g01222 676 SUPERFAMILY TPR-like 297 640 IPR011990 GO:0005515
Lsi11g01222 676 Pfam E motif 610 671 IPR046848 -
Lsi11g01222 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Lsi11g01222 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Lsi11g01222 676 TIGRFAM PPR: pentatricopeptide repeat domain 364 392 IPR002885 -
Lsi11g01222 676 TIGRFAM PPR: pentatricopeptide repeat domain 95 126 IPR002885 -
Lsi11g01222 676 TIGRFAM PPR: pentatricopeptide repeat domain 190 219 IPR002885 -
Lsi11g01222 676 TIGRFAM PPR: pentatricopeptide repeat domain 332 358 IPR002885 -
Lsi11g01222 676 TIGRFAM PPR: pentatricopeptide repeat domain 301 330 IPR002885 -
Lsi11g01222 676 TIGRFAM PPR: pentatricopeptide repeat domain 394 427 IPR002885 -
Lsi11g01222 676 TIGRFAM PPR: pentatricopeptide repeat domain 159 190 IPR002885 -
Lsi11g01222 676 TIGRFAM PPR: pentatricopeptide repeat domain 258 282 IPR002885 -
Lsi11g01222 676 TIGRFAM PPR: pentatricopeptide repeat domain 495 528 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01222 - - - bhj:120077123 1253.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01222 Lsi-Chr11:20810925 Lsi06g01295 Lsi-Chr6:23498959 3.29E-18 dispersed
Lsi11g01222 Lsi-Chr11:20810925 Lsi05g02025 Lsi-Chr5:27248698 5.36E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01222 Lsi_Chr11 FPKM 42.749176 43.472729 37.301804 36.764626 35.361961 36.100334 37.066849 26.713448 27.525101 30.097012