Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01224 ATGGCAAAATCTTTCAAAGGCAATGTATCTTTCAAGCATACGAGGAAGATTTCTGCTGGCGGAGCTGGTAGCGAAATTAATCACGAGGAGCTTCCCATTCTTCTCAATCACGAACCTAAGGATCATCATCGTCGTCTTAGAGATCGTCATGCGGTGAACGATTCTGATCCATCTGACCGAACAGAGGTAATTCTCAAGATCGACGACGGCGGTTCTTCAGCTGTCTCCAGATCTCAGGACCCTGCCGGCAGTAATGGCGGGAAGGTATGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGCAATTGGAATTGGGGAAAGTGCGAGTAGGGTTAGTGGTGCGAGAACGAGTGATAGTGGTGTTGATAGAAATGAGGGATTTGAATTTGCACAGCCTGGTTATGGTATGGAGGATCCACCAACGAAGCTGATTGGCGAGTTTCTTCATAAGCAGAAAATGAGGGGGGAAACGACTTTGGATATGGATTTGGAAATGGAGGAGTTGAGACCTCCATTGGCAGAGTCGCCGTTGAGTCAAACTTCTAAGGATCTTAAAGTTTCATTCCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCGATGAGAAGGCGGTATAGAGATTCTCACGATTTGCAGGAAGAGTATAAAGGACAACCGCCATGGCAGCAATCGCATCATGAGCGTCTTGGATCTCCGACTATCTCTGGGGTTCAGAATGAGACTCTTGCTGAGGCTATGAGGTGCGCATCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAATCTCATTTGCTGAGGGCGAAAACCAAGTCAAGATTGATAGACCCGCCTGCAGAGCCAGACCGGCTCTCTGGCCTTATTCCTAAATCAGGACAACTACGATCTGGGTTTCTCGGCAAGATTGACGACGACGACGATGATCCCTTTCTGGATGAGGACCTACCAGACGATTTTAAAAGGGGAAATTTCAATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTCTAATCACTGCGGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGGAAAAGAGCCTATGGGAGTTGGATATATGGAAATGGGAGGTGATGGTTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATCGTAGTATTTTTTATTGAGAGGAACTTTCTTTTGCGTAAAAGGGTGCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGGTCGCTTGGCATTTGTTGTTCAATAAGCGGGTTGAGAAACAAACCAAGACCAGTATACTCAATTATGTGAGGAGAGTATTAGTGTGTCTCTTGATAAGCACATTGATATGGCTTGTGAAAACCTTGATGGTAAAGGTGCTTGCATCTTCCTTCCATGTAAGCACATACTTCGATCGAATTCAAGAATCGTTGTTTAACCAATATGTCATTGAGACGCTCTCAGGGCCACCGCTGATTGAATTACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTTCAAAACTTACAGAATGCTGGAATTAACATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTGTAAAGAGTGGAAGGCTAATAGGCAGTGGACGGACCCACAAACGTTTTTGTACAAAAAGTTCCAAATTCTCTCAAGCACTTCCCAAAAATGGGAACGATGGAATAACGATTGACCACTTGCATAAACTAAGTCCGAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACCGGGGCCATGTGTTGATAATGAATCTACTACAGAGATCAAAAAATTAGGTGGGTTGTCTCGTGAGATTAGTGAAGGTACTCGTAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTTTCAAAACGATGAGTCTCTTTGAAGGAGCAATTGAAAACCGGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGAAAGCAAAACTGATTTCAGAAAACGTTCCTTCCCTCTCGTCTCTTGTTAGTGCCATTGTCTTTGCTACAAATAAATTAATGTTAATGAAGCTTTGTCCGAAACTAAGCTCCAAAATAGTCCAAATGTTATCCATGGTCGTGCCAATTTCTGATAAAATTTCTTCCAAGTCTTGTGTTTTATGCATTTTCACCGCCTATGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTGCACCATATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTTCTAGGAATTGCCACCAGCAAATTTTTCGTCTTTGTTAGTTCTCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCACTCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGTGAAATCGATGGAATGCAGGTAATGCTCATTTGTTTTGATTTTTACACTACTATTGTTCTTCTGAACCTTGGATCTGATTATCATCCCACTGAAATGGTTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATATGACAACTTGAAGATTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCGGTTGAATTCTCTGTTCATATAGCTACGCCAGCTGAGAAAATTACAGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCCACAAAGAACATTGGTATCCTTCCCCTATGATTGTGTTCAAGGATATAGACGGTTTAAATATGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCACCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCTGTCTTGGTCGAAGAAGTCGTCAAAGTCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATATCAATATCCGTTCACTGCCTTCTTCTGCACCCTCCATTGGCTTTCCATCTAATTAG 3087 42.31 MAKSFKGNVSFKHTRKISAGGAGSEINHEELPILLNHEPKDHHRRLRDRHAVNDSDPSDRTEVILKIDDGGSSAVSRSQDPAGSNGGKVWRESRYDFWNNDAIGIGESASRVSGARTSDSGVDRNEGFEFAQPGYGMEDPPTKLIGEFLHKQKMRGETTLDMDLEMEELRPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSHDLQEEYKGQPPWQQSHHERLGSPTISGVQNETLAEAMRCASNLSFHSELSFQRKSHLLRAKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIDDDDDDPFLDEDLPDDFKRGNFNALTVLQWVSLILITAALVCTLSIPYLREKSLWELDIWKWEVMVLILICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLVAWHLLFNKRVEKQTKTSILNYVRRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIELRKNEEEEERIADEVQNLQNAGINIPPDLKAATFASVKSGRLIGSGRTHKRFCTKSSKFSQALPKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPCVDNESTTEIKKLGGLSREISEGTRKYIYLDDLMRFMREDEVFKTMSLFEGAIENRRISKSALKNWVKAKLISENVPSLSSLVSAIVFATNKLMLMKLCPKLSSKIVQMLSMVVPISDKISSKSCVLCIFTAYVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIATSKFFVFVSSQIVVVAFIFGNTCKTIFEALIFLFVMHPFDVGDRCEIDGMQVMLICFDFYTTIVLLNLGSDYHPTEMVVEEMNILTTVFLRYDNLKIIIPNSVLATKLIHNFYRSPDMGESVEFSVHIATPAEKITAMKQRIISYIEGHKEHWYPSPMIVFKDIDGLNMLKLAVWLSHRMNHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSN 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20834099 20840361 - Lsi11G012240.1 Lsi11g01224 674391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01224 1028 Coils Coil 501 527 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 108 683 IPR016688 -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 114 - -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 36 89 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 108 683 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 114 IPR016688 -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 869 1018 IPR016688 -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 199 216 - -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 175 198 - -
Lsi11g01224 1028 SUPERFAMILY Sm-like ribonucleoproteins 822 906 IPR010920 -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 869 1018 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 747 859 - -
Lsi11g01224 1028 Pfam Mechanosensitive ion channel 774 1003 IPR006685 GO:0016020|GO:0055085
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 36 66 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 747 859 IPR016688 -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 174 235 - -
Lsi11g01224 1028 Gene3D - 832 906 IPR023408 -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 110 139 - -
Lsi11g01224 1028 PIRSF Memb_At2g17000 47 685 IPR016688 -
Lsi11g01224 1028 PIRSF Memb_At2g17000 733 1027 IPR016688 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00812 Lsi11g01224 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00810 Lsi-Chr10:11068664 Lsi11g01224 Lsi-Chr11:20834099 0 dispersed
Lsi10g00812 Lsi-Chr10:11138221 Lsi11g01224 Lsi-Chr11:20834099 0 dispersed
Lsi11g01224 Lsi-Chr11:20834099 Lsi06g00313 Lsi-Chr6:3564957 4.65E-167 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01224 K22048 - csv:101207426 1120.15