Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01224 | ATGGCAAAATCTTTCAAAGGCAATGTATCTTTCAAGCATACGAGGAAGATTTCTGCTGGCGGAGCTGGTAGCGAAATTAATCACGAGGAGCTTCCCATTCTTCTCAATCACGAACCTAAGGATCATCATCGTCGTCTTAGAGATCGTCATGCGGTGAACGATTCTGATCCATCTGACCGAACAGAGGTAATTCTCAAGATCGACGACGGCGGTTCTTCAGCTGTCTCCAGATCTCAGGACCCTGCCGGCAGTAATGGCGGGAAGGTATGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGCAATTGGAATTGGGGAAAGTGCGAGTAGGGTTAGTGGTGCGAGAACGAGTGATAGTGGTGTTGATAGAAATGAGGGATTTGAATTTGCACAGCCTGGTTATGGTATGGAGGATCCACCAACGAAGCTGATTGGCGAGTTTCTTCATAAGCAGAAAATGAGGGGGGAAACGACTTTGGATATGGATTTGGAAATGGAGGAGTTGAGACCTCCATTGGCAGAGTCGCCGTTGAGTCAAACTTCTAAGGATCTTAAAGTTTCATTCCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCGATGAGAAGGCGGTATAGAGATTCTCACGATTTGCAGGAAGAGTATAAAGGACAACCGCCATGGCAGCAATCGCATCATGAGCGTCTTGGATCTCCGACTATCTCTGGGGTTCAGAATGAGACTCTTGCTGAGGCTATGAGGTGCGCATCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAATCTCATTTGCTGAGGGCGAAAACCAAGTCAAGATTGATAGACCCGCCTGCAGAGCCAGACCGGCTCTCTGGCCTTATTCCTAAATCAGGACAACTACGATCTGGGTTTCTCGGCAAGATTGACGACGACGACGATGATCCCTTTCTGGATGAGGACCTACCAGACGATTTTAAAAGGGGAAATTTCAATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTCTAATCACTGCGGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGGAAAAGAGCCTATGGGAGTTGGATATATGGAAATGGGAGGTGATGGTTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATCGTAGTATTTTTTATTGAGAGGAACTTTCTTTTGCGTAAAAGGGTGCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGGTCGCTTGGCATTTGTTGTTCAATAAGCGGGTTGAGAAACAAACCAAGACCAGTATACTCAATTATGTGAGGAGAGTATTAGTGTGTCTCTTGATAAGCACATTGATATGGCTTGTGAAAACCTTGATGGTAAAGGTGCTTGCATCTTCCTTCCATGTAAGCACATACTTCGATCGAATTCAAGAATCGTTGTTTAACCAATATGTCATTGAGACGCTCTCAGGGCCACCGCTGATTGAATTACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTTCAAAACTTACAGAATGCTGGAATTAACATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTGTAAAGAGTGGAAGGCTAATAGGCAGTGGACGGACCCACAAACGTTTTTGTACAAAAAGTTCCAAATTCTCTCAAGCACTTCCCAAAAATGGGAACGATGGAATAACGATTGACCACTTGCATAAACTAAGTCCGAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACCGGGGCCATGTGTTGATAATGAATCTACTACAGAGATCAAAAAATTAGGTGGGTTGTCTCGTGAGATTAGTGAAGGTACTCGTAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTTTCAAAACGATGAGTCTCTTTGAAGGAGCAATTGAAAACCGGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGAAAGCAAAACTGATTTCAGAAAACGTTCCTTCCCTCTCGTCTCTTGTTAGTGCCATTGTCTTTGCTACAAATAAATTAATGTTAATGAAGCTTTGTCCGAAACTAAGCTCCAAAATAGTCCAAATGTTATCCATGGTCGTGCCAATTTCTGATAAAATTTCTTCCAAGTCTTGTGTTTTATGCATTTTCACCGCCTATGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTGCACCATATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTTCTAGGAATTGCCACCAGCAAATTTTTCGTCTTTGTTAGTTCTCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCACTCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGTGAAATCGATGGAATGCAGGTAATGCTCATTTGTTTTGATTTTTACACTACTATTGTTCTTCTGAACCTTGGATCTGATTATCATCCCACTGAAATGGTTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATATGACAACTTGAAGATTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCGGTTGAATTCTCTGTTCATATAGCTACGCCAGCTGAGAAAATTACAGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCCACAAAGAACATTGGTATCCTTCCCCTATGATTGTGTTCAAGGATATAGACGGTTTAAATATGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCACCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCTGTCTTGGTCGAAGAAGTCGTCAAAGTCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATATCAATATCCGTTCACTGCCTTCTTCTGCACCCTCCATTGGCTTTCCATCTAATTAG | 3087 | 42.31 | MAKSFKGNVSFKHTRKISAGGAGSEINHEELPILLNHEPKDHHRRLRDRHAVNDSDPSDRTEVILKIDDGGSSAVSRSQDPAGSNGGKVWRESRYDFWNNDAIGIGESASRVSGARTSDSGVDRNEGFEFAQPGYGMEDPPTKLIGEFLHKQKMRGETTLDMDLEMEELRPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSHDLQEEYKGQPPWQQSHHERLGSPTISGVQNETLAEAMRCASNLSFHSELSFQRKSHLLRAKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIDDDDDDPFLDEDLPDDFKRGNFNALTVLQWVSLILITAALVCTLSIPYLREKSLWELDIWKWEVMVLILICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLVAWHLLFNKRVEKQTKTSILNYVRRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIELRKNEEEEERIADEVQNLQNAGINIPPDLKAATFASVKSGRLIGSGRTHKRFCTKSSKFSQALPKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPCVDNESTTEIKKLGGLSREISEGTRKYIYLDDLMRFMREDEVFKTMSLFEGAIENRRISKSALKNWVKAKLISENVPSLSSLVSAIVFATNKLMLMKLCPKLSSKIVQMLSMVVPISDKISSKSCVLCIFTAYVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIATSKFFVFVSSQIVVVAFIFGNTCKTIFEALIFLFVMHPFDVGDRCEIDGMQVMLICFDFYTTIVLLNLGSDYHPTEMVVEEMNILTTVFLRYDNLKIIIPNSVLATKLIHNFYRSPDMGESVEFSVHIATPAEKITAMKQRIISYIEGHKEHWYPSPMIVFKDIDGLNMLKLAVWLSHRMNHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSN | 1028 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 20834099 | 20840361 | - | Lsi11G012240.1 | Lsi11g01224 | 674391 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01224 | 1028 | Coils | Coil | 501 | 527 | - | - | |
Lsi11g01224 | 1028 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 108 | 683 | IPR016688 | - | |
Lsi11g01224 | 1028 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 2 | 114 | - | - | |
Lsi11g01224 | 1028 | MobiDBLite | consensus disorder prediction | 36 | 89 | - | - | |
Lsi11g01224 | 1028 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 108 | 683 | - | - | |
Lsi11g01224 | 1028 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 2 | 114 | IPR016688 | - | |
Lsi11g01224 | 1028 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 869 | 1018 | IPR016688 | - | |
Lsi11g01224 | 1028 | MobiDBLite | consensus disorder prediction | 199 | 216 | - | - | |
Lsi11g01224 | 1028 | MobiDBLite | consensus disorder prediction | 175 | 198 | - | - | |
Lsi11g01224 | 1028 | SUPERFAMILY | Sm-like ribonucleoproteins | 822 | 906 | IPR010920 | - | |
Lsi11g01224 | 1028 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 869 | 1018 | - | - | |
Lsi11g01224 | 1028 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 747 | 859 | - | - | |
Lsi11g01224 | 1028 | Pfam | Mechanosensitive ion channel | 774 | 1003 | IPR006685 | GO:0016020|GO:0055085 | |
Lsi11g01224 | 1028 | MobiDBLite | consensus disorder prediction | 36 | 66 | - | - | |
Lsi11g01224 | 1028 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 747 | 859 | IPR016688 | - | |
Lsi11g01224 | 1028 | MobiDBLite | consensus disorder prediction | 174 | 235 | - | - | |
Lsi11g01224 | 1028 | Gene3D | - | 832 | 906 | IPR023408 | - | |
Lsi11g01224 | 1028 | MobiDBLite | consensus disorder prediction | 110 | 139 | - | - | |
Lsi11g01224 | 1028 | PIRSF | Memb_At2g17000 | 47 | 685 | IPR016688 | - | |
Lsi11g01224 | 1028 | PIRSF | Memb_At2g17000 | 733 | 1027 | IPR016688 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi10g00812 | Lsi11g01224 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g00810 | Lsi-Chr10:11068664 | Lsi11g01224 | Lsi-Chr11:20834099 | 0 | dispersed | |
Lsi10g00812 | Lsi-Chr10:11138221 | Lsi11g01224 | Lsi-Chr11:20834099 | 0 | dispersed | |
Lsi11g01224 | Lsi-Chr11:20834099 | Lsi06g00313 | Lsi-Chr6:3564957 | 4.65E-167 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01224 | K22048 | - | csv:101207426 | 1120.15 |