Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01224 ATGGCAAAATCTTTCAAAGGCAATGTATCTTTCAAGCATACGAGGAAGATTTCTGCTGGCGGAGCTGGTAGCGAAATTAATCACGAGGAGCTTCCCATTCTTCTCAATCACGAACCTAAGGATCATCATCGTCGTCTTAGAGATCGTCATGCGGTGAACGATTCTGATCCATCTGACCGAACAGAGGTAATTCTCAAGATCGACGACGGCGGTTCTTCAGCTGTCTCCAGATCTCAGGACCCTGCCGGCAGTAATGGCGGGAAGGTATGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGCAATTGGAATTGGGGAAAGTGCGAGTAGGGTTAGTGGTGCGAGAACGAGTGATAGTGGTGTTGATAGAAATGAGGGATTTGAATTTGCACAGCCTGGTTATGGTATGGAGGATCCACCAACGAAGCTGATTGGCGAGTTTCTTCATAAGCAGAAAATGAGGGGGGAAACGACTTTGGATATGGATTTGGAAATGGAGGAGTTGAGACCTCCATTGGCAGAGTCGCCGTTGAGTCAAACTTCTAAGGATCTTAAAGTTTCATTCCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCGATGAGAAGGCGGTATAGAGATTCTCACGATTTGCAGGAAGAGTATAAAGGACAACCGCCATGGCAGCAATCGCATCATGAGCGTCTTGGATCTCCGACTATCTCTGGGGTTCAGAATGAGACTCTTGCTGAGGCTATGAGGTGCGCATCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAATCTCATTTGCTGAGGGCGAAAACCAAGTCAAGATTGATAGACCCGCCTGCAGAGCCAGACCGGCTCTCTGGCCTTATTCCTAAATCAGGACAACTACGATCTGGGTTTCTCGGCAAGATTGACGACGACGACGATGATCCCTTTCTGGATGAGGACCTACCAGACGATTTTAAAAGGGGAAATTTCAATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTCTAATCACTGCGGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGGAAAAGAGCCTATGGGAGTTGGATATATGGAAATGGGAGGTGATGGTTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATCGTAGTATTTTTTATTGAGAGGAACTTTCTTTTGCGTAAAAGGGTGCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGGTCGCTTGGCATTTGTTGTTCAATAAGCGGGTTGAGAAACAAACCAAGACCAGTATACTCAATTATGTGAGGAGAGTATTAGTGTGTCTCTTGATAAGCACATTGATATGGCTTGTGAAAACCTTGATGGTAAAGGTGCTTGCATCTTCCTTCCATGTAAGCACATACTTCGATCGAATTCAAGAATCGTTGTTTAACCAATATGTCATTGAGACGCTCTCAGGGCCACCGCTGATTGAATTACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTTCAAAACTTACAGAATGCTGGAATTAACATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTGTAAAGAGTGGAAGGCTAATAGGCAGTGGACGGACCCACAAACGTTTTTGTACAAAAAGTTCCAAATTCTCTCAAGCACTTCCCAAAAATGGGAACGATGGAATAACGATTGACCACTTGCATAAACTAAGTCCGAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACCGGGGCCATGTGTTGATAATGAATCTACTACAGAGATCAAAAAATTAGGTGGGTTGTCTCGTGAGATTAGTGAAGGTACTCGTAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTTTCAAAACGATGAGTCTCTTTGAAGGAGCAATTGAAAACCGGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGAAAGCAAAACTGATTTCAGAAAACGTTCCTTCCCTCTCGTCTCTTGTTAGTGCCATTGTCTTTGCTACAAATAAATTAATGTTAATGAAGCTTTGTCCGAAACTAAGCTCCAAAATAGTCCAAATGTTATCCATGGTCGTGCCAATTTCTGATAAAATTTCTTCCAAGTCTTGTGTTTTATGCATTTTCACCGCCTATGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTGCACCATATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTTCTAGGAATTGCCACCAGCAAATTTTTCGTCTTTGTTAGTTCTCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCACTCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGTGAAATCGATGGAATGCAGGTAATGCTCATTTGTTTTGATTTTTACACTACTATTGTTCTTCTGAACCTTGGATCTGATTATCATCCCACTGAAATGGTTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATATGACAACTTGAAGATTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCGGTTGAATTCTCTGTTCATATAGCTACGCCAGCTGAGAAAATTACAGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCCACAAAGAACATTGGTATCCTTCCCCTATGATTGTGTTCAAGGATATAGACGGTTTAAATATGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCACCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCTGTCTTGGTCGAAGAAGTCGTCAAAGTCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATATCAATATCCGTTCACTGCCTTCTTCTGCACCCTCCATTGGCTTTCCATCTAATTAG 3087 42.31 MAKSFKGNVSFKHTRKISAGGAGSEINHEELPILLNHEPKDHHRRLRDRHAVNDSDPSDRTEVILKIDDGGSSAVSRSQDPAGSNGGKVWRESRYDFWNNDAIGIGESASRVSGARTSDSGVDRNEGFEFAQPGYGMEDPPTKLIGEFLHKQKMRGETTLDMDLEMEELRPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSHDLQEEYKGQPPWQQSHHERLGSPTISGVQNETLAEAMRCASNLSFHSELSFQRKSHLLRAKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIDDDDDDPFLDEDLPDDFKRGNFNALTVLQWVSLILITAALVCTLSIPYLREKSLWELDIWKWEVMVLILICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLVAWHLLFNKRVEKQTKTSILNYVRRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIELRKNEEEEERIADEVQNLQNAGINIPPDLKAATFASVKSGRLIGSGRTHKRFCTKSSKFSQALPKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPCVDNESTTEIKKLGGLSREISEGTRKYIYLDDLMRFMREDEVFKTMSLFEGAIENRRISKSALKNWVKAKLISENVPSLSSLVSAIVFATNKLMLMKLCPKLSSKIVQMLSMVVPISDKISSKSCVLCIFTAYVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIATSKFFVFVSSQIVVVAFIFGNTCKTIFEALIFLFVMHPFDVGDRCEIDGMQVMLICFDFYTTIVLLNLGSDYHPTEMVVEEMNILTTVFLRYDNLKIIIPNSVLATKLIHNFYRSPDMGESVEFSVHIATPAEKITAMKQRIISYIEGHKEHWYPSPMIVFKDIDGLNMLKLAVWLSHRMNHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSN 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20834099 20840361 - Lsi11G012240.1 Lsi11g01224 674391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01224 1028 Coils Coil 501 527 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 108 683 IPR016688 -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 114 - -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 36 89 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 108 683 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 114 IPR016688 -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 869 1018 IPR016688 -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 199 216 - -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 175 198 - -
Lsi11g01224 1028 SUPERFAMILY Sm-like ribonucleoproteins 822 906 IPR010920 -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 869 1018 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 747 859 - -
Lsi11g01224 1028 Pfam Mechanosensitive ion channel 774 1003 IPR006685 GO:0016020|GO:0055085
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 36 66 - -
Lsi11g01224 1028 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 747 859 IPR016688 -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 174 235 - -
Lsi11g01224 1028 Gene3D - 832 906 IPR023408 -
Lsi11g01224 1028 MobiDBLite consensus disorder prediction 110 139 - -
Lsi11g01224 1028 PIRSF Memb_At2g17000 47 685 IPR016688 -
Lsi11g01224 1028 PIRSF Memb_At2g17000 733 1027 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01224 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101207426 1120.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00812 Lsi11g01224 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00810 Lsi-Chr10:11068664 Lsi11g01224 Lsi-Chr11:20834099 0 dispersed
Lsi10g00812 Lsi-Chr10:11138221 Lsi11g01224 Lsi-Chr11:20834099 0 dispersed
Lsi11g01224 Lsi-Chr11:20834099 Lsi06g00313 Lsi-Chr6:3564957 4.65E-167 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g02054 . 139 631 Mechanosensitive Ion Channel Family AT4G00290 52.7 8.1e-137 484.2
Lsi05g00779 . 67 732 Mechanosensitive Ion Channel Family AT5G10490 50.9 1.8e-163 573.2
Lsi08g01024 . 10 643 Mechanosensitive Ion Channel Family AT1G58200 50.9 3.1e-163 572.4
Lsi05g00779 . 43 510 Mechanosensitive Ion Channel Family AT1G58200 56.7 1.7e-145 513.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G53470 53.5 8.5e-254 873.6
Lsi10g00812 CCT 16 770 Mechanosensitive Ion Channel Family AT1G53470 51.2 3.2e-213 738.8
Lsi10g00810 . 43 961 Mechanosensitive Ion Channel Family AT3G14810 51.5 8.4e-243 837.0
Lsi10g00812 CCT 17 770 Mechanosensitive Ion Channel Family AT3G14810 51.5 1.6e-209 726.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G78610 57.4 1.7e-275 945.7
Lsi10g00812 CCT 15 770 Mechanosensitive Ion Channel Family AT1G78610 55.5 1.3e-235 813.1
Lsi10g00810 . 226 963 Mechanosensitive Ion Channel Family AT2G17000 58.4 3.7e-230 795.0
Lsi10g00812 CCT 167 769 Mechanosensitive Ion Channel Family AT2G17000 60.2 5.0e-203 704.9
Lsi11g01224 CCT 264 1022 Mechanosensitive Ion Channel Family AT2G17000 50.3 8.5e-203 704.1
Lsi10g00810 . 1 676 Mechanosensitive Ion Channel Family AT2G17010 50.6 1.2e-162 570.5
Lsi10g00812 CCT 147 536 Mechanosensitive Ion Channel Family AT2G17010 61.2 5.8e-138 488.4
Lsi04g01392 . 72 742 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.4e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01224 Lsi_Chr11 FPKM 9.375603 9.604402 38.578629 40.512012 3.35149 4.315351 3.077225 19.934107 17.665567 21.17728