Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01225 | ATGTTATATGCTCTAGACGTAAATGTGGAGAGGGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATTTGCTCACGATCCTGCAAATCGACCTGCAATTGAAGTCCGCCTAGTGCAGGTCCAAGCCACTTCTGACGAGAATTCTGCGGAATTTGCTGATTCATGTCCTGCAAAAGACACTGACCATAATTCTGCAAATTTCTTGGGCAGACAGAGCATACATCCACCACCTGCCTTTGGGTCATCTCCTAACCTTGAGGCCTTGGCCCTTGAAGCTAATAACGCTCAGGATCTGGAGGTTGATCAGTCTGTACATGCCAGAACACAGTTTTTCCGGCCAATGCATGAAATCACCTTCTCTACGGATGATAAGCCGAAACTTCTTAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGGCTGAACATCCAGGAGGCACATGCATTTTCCACTGTTGACGGTTACTCATTGGATGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAGCGATTGAAGACTGCACTAGAGAAGGAAGTCTTACAGGTTGAGAGTCATGTTTGGCCAAATCATAAATCCTCGTCTCCTGTGAGGGAACTTGATATAACAGCTAAATGTGAGCCTGATCGGGTGGAAATACCCACAGATGGGACCGATGTATGGGAAATTAATCCTAGACATTTGAAGTTTGAGCATAAAGTTGCATCTGGTTCATATGGGGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAGTTCTCAAAACTGAACGTGTAAATACAGATATGCAAAGTGAGTTTGCCCAGGAGGTATATATTATGAGAAAAGTAAGGCATAAGAATGTCGTACAGTTTATAGGTGCATGTACGAAGCCCCCAAGCTTGTGCATTGTAACAGAATATGGACATCTCTCTCACACCCACCTTGCACTCCAGGTTGTCAAGGTTGCTGATTTCGGTGTTGCCAGGGTAAAAGCTCAATCAGGAGTTATGACTGCAGAAACTGGGACGTATCGATGGATGGCTCCTGAGCTACCTTATGAATTCCTAACACCATTGCAAGCCGCAGTCGGAGTGGTACAAAAGATAAGTAAGGAAGTAGCTGAAGACGGCGACGAACGAAGAAAGGAGAAGAGTGGAGGATTATTTTCTGTGTTGAGACGAAACCATCACTGA | 1188 | 44.44 | MLYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQATSDENSAEFADSCPAKDTDHNSANFLGRQSIHPPPAFGSSPNLEALALEANNAQDLEVDQSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKTALEKEVLQVESHVWPNHKSSSPVRELDITAKCEPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKTERVNTDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEYGHLSHTHLALQVVKVADFGVARVKAQSGVMTAETGTYRWMAPELPYEFLTPLQAAVGVVQKISKEVAEDGDERRKEKSGGLFSVLRRNHH | 395 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 20841418 | 20851438 | - | Lsi11G012250.1 | Lsi11g01225 | 674392 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01225 | 395 | MobiDBLite | consensus disorder prediction | 374 | 395 | - | - | |
Lsi11g01225 | 395 | CDD | ACT_TyrKc | 115 | 182 | - | - | |
Lsi11g01225 | 395 | Gene3D | Phosphorylase Kinase; domain 1 | 219 | 307 | - | - | |
Lsi11g01225 | 395 | ProSiteProfiles | Protein kinase domain profile. | 229 | 395 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01225 | 395 | Coils | Coil | 167 | 187 | - | - | |
Lsi11g01225 | 395 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 | 5 | 305 | - | - | |
Lsi11g01225 | 395 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 | 316 | 348 | - | - | |
Lsi11g01225 | 395 | Pfam | Protein tyrosine and serine/threonine kinase | 229 | 307 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g01225 | 395 | MobiDBLite | consensus disorder prediction | 50 | 74 | - | - | |
Lsi11g01225 | 395 | MobiDBLite | consensus disorder prediction | 374 | 388 | - | - | |
Lsi11g01225 | 395 | ProSiteProfiles | ACT domain profile. | 117 | 196 | IPR002912 | - | |
Lsi11g01225 | 395 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 5 | 305 | - | - | |
Lsi11g01225 | 395 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 316 | 348 | - | - | |
Lsi11g01225 | 395 | SUPERFAMILY | ACT-like | 115 | 184 | IPR045865 | - | |
Lsi11g01225 | 395 | Gene3D | Transferase(Phosphotransferase) domain 1 | 308 | 354 | - | - | |
Lsi11g01225 | 395 | SUPERFAMILY | Protein kinase-like (PK-like) | 213 | 351 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g01075 | Lsi-Chr7:16102866 | Lsi11g01225 | Lsi-Chr11:20841418 | 8.70E-139 | dispersed | |
Lsi08g00545 | Lsi-Chr8:13577550 | Lsi11g01225 | Lsi-Chr11:20841418 | 2.81E-79 | dispersed | |
Lsi11g01225 | Lsi-Chr11:20841418 | Lsi11g00832 | Lsi-Chr11:10353365 | 2.73E-26 | dispersed | |
Lsi11g01225 | Lsi-Chr11:20841418 | Lsi04g01782 | Lsi-Chr4:25024973 | 1.07E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84044 | PF07714 | PK_Tyr_Ser-Thr | 1.90E-15 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01225 | - | - | csv:101213048 | 654.055 |