Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01225 ATGTTATATGCTCTAGACGTAAATGTGGAGAGGGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATTTGCTCACGATCCTGCAAATCGACCTGCAATTGAAGTCCGCCTAGTGCAGGTCCAAGCCACTTCTGACGAGAATTCTGCGGAATTTGCTGATTCATGTCCTGCAAAAGACACTGACCATAATTCTGCAAATTTCTTGGGCAGACAGAGCATACATCCACCACCTGCCTTTGGGTCATCTCCTAACCTTGAGGCCTTGGCCCTTGAAGCTAATAACGCTCAGGATCTGGAGGTTGATCAGTCTGTACATGCCAGAACACAGTTTTTCCGGCCAATGCATGAAATCACCTTCTCTACGGATGATAAGCCGAAACTTCTTAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGGCTGAACATCCAGGAGGCACATGCATTTTCCACTGTTGACGGTTACTCATTGGATGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAGCGATTGAAGACTGCACTAGAGAAGGAAGTCTTACAGGTTGAGAGTCATGTTTGGCCAAATCATAAATCCTCGTCTCCTGTGAGGGAACTTGATATAACAGCTAAATGTGAGCCTGATCGGGTGGAAATACCCACAGATGGGACCGATGTATGGGAAATTAATCCTAGACATTTGAAGTTTGAGCATAAAGTTGCATCTGGTTCATATGGGGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAGTTCTCAAAACTGAACGTGTAAATACAGATATGCAAAGTGAGTTTGCCCAGGAGGTATATATTATGAGAAAAGTAAGGCATAAGAATGTCGTACAGTTTATAGGTGCATGTACGAAGCCCCCAAGCTTGTGCATTGTAACAGAATATGGACATCTCTCTCACACCCACCTTGCACTCCAGGTTGTCAAGGTTGCTGATTTCGGTGTTGCCAGGGTAAAAGCTCAATCAGGAGTTATGACTGCAGAAACTGGGACGTATCGATGGATGGCTCCTGAGCTACCTTATGAATTCCTAACACCATTGCAAGCCGCAGTCGGAGTGGTACAAAAGATAAGTAAGGAAGTAGCTGAAGACGGCGACGAACGAAGAAAGGAGAAGAGTGGAGGATTATTTTCTGTGTTGAGACGAAACCATCACTGA 1188 44.44 MLYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQATSDENSAEFADSCPAKDTDHNSANFLGRQSIHPPPAFGSSPNLEALALEANNAQDLEVDQSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKTALEKEVLQVESHVWPNHKSSSPVRELDITAKCEPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKTERVNTDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEYGHLSHTHLALQVVKVADFGVARVKAQSGVMTAETGTYRWMAPELPYEFLTPLQAAVGVVQKISKEVAEDGDERRKEKSGGLFSVLRRNHH 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20841418 20851438 - Lsi11G012250.1 Lsi11g01225 674392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01225 395 MobiDBLite consensus disorder prediction 374 395 - -
Lsi11g01225 395 CDD ACT_TyrKc 115 182 - -
Lsi11g01225 395 Gene3D Phosphorylase Kinase; domain 1 219 307 - -
Lsi11g01225 395 ProSiteProfiles Protein kinase domain profile. 229 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01225 395 Coils Coil 167 187 - -
Lsi11g01225 395 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 5 305 - -
Lsi11g01225 395 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 316 348 - -
Lsi11g01225 395 Pfam Protein tyrosine and serine/threonine kinase 229 307 IPR001245 GO:0004672|GO:0006468
Lsi11g01225 395 MobiDBLite consensus disorder prediction 50 74 - -
Lsi11g01225 395 MobiDBLite consensus disorder prediction 374 388 - -
Lsi11g01225 395 ProSiteProfiles ACT domain profile. 117 196 IPR002912 -
Lsi11g01225 395 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 5 305 - -
Lsi11g01225 395 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 316 348 - -
Lsi11g01225 395 SUPERFAMILY ACT-like 115 184 IPR045865 -
Lsi11g01225 395 Gene3D Transferase(Phosphotransferase) domain 1 308 354 - -
Lsi11g01225 395 SUPERFAMILY Protein kinase-like (PK-like) 213 351 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01075 Lsi-Chr7:16102866 Lsi11g01225 Lsi-Chr11:20841418 8.70E-139 dispersed
Lsi08g00545 Lsi-Chr8:13577550 Lsi11g01225 Lsi-Chr11:20841418 2.81E-79 dispersed
Lsi11g01225 Lsi-Chr11:20841418 Lsi11g00832 Lsi-Chr11:10353365 2.73E-26 dispersed
Lsi11g01225 Lsi-Chr11:20841418 Lsi04g01782 Lsi-Chr4:25024973 1.07E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84044 PF07714 PK_Tyr_Ser-Thr 1.90E-15 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01225 - - csv:101213048 654.055