Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01228 ATGGCGTTTTCACTCATGGCGGCATCCTCTCTTAGTATGCATTTTGGAAGAAAGACTCCAATTCGATGTTCTTCCTCTTCTTCCTCAGCTGTTTCTTCTCAAGCCAAATCGATTCAGTTCGACCTGAAAACGTACTGGAAACAGCTGATTTTCGAGATCAACCAGAAGTTGGATGAAGCTGTTCCAATTCAGTACCCCGACCAGATCTATGAGGCTATGCGTTACTCCGTCTTGGCTCAAGGGGCCAAGCGAGCTCCTCCGGTTATGTGTGTCGCCGCCTGCGAGCTCTTCGGCGTTGATCGCATCGCTGCTTTCCCCACCGCCTGTGCCCTCGAAATGGTTCATGAAGCTTCTTTGATCCATGATGACCTTCCTTGCATGGATGATGACCCCTCACGGCGTGGCCAACCTTCAAACCATACAGTTTATGGTGTTGACATGGCTATCCTTGCAGGTGATGCACTTTTCCCCCTTGGCTTCCAACATATCGTCTCACATACACCCTTTGATCTTGTTCCCGAGTCCCGCCTGCTCCGTGTGGTTGCCGAGATTGCCCGAGCTGTTGGTTCCAGAGGCATGGCAGCTGGACAGTTTCTTGACCTTGAGGGAGGTCCCAACTCCGTTGAATTCGTCCAAGAAAAAAAATTTGGTGAAATGGCCCAGTGTTCTGCAGTATGTGGAGGACTTCTAGCTGGAGCAGAAGACCATGAGATACAGAGATTAAGAAGGTACGGAAGATCGGTTGGGGTGTTATATCAGGTAGTTGATGATATTTTGGAAGAACAATCGAAAAAACTCAATGAAACAGATGAGAGTAAGAGGAGAAAAGGGAAGAGCTATGTTGGAGTATATGGGATTGAGAAAGCTAAGGAGGTGGCAGAGGAGCTGAGGAGCAAAGCTAAGAAGGAATTGGAAGGATTTGAGAAGTATGGAGATCAAGTGATGCCTTTGTACAGCTTTGTGGACTATGCTGCTGATAGGAGCTTCAGTTTTGAAACTACAAGTTGA 1008 47.72 MAFSLMAASSLSMHFGRKTPIRCSSSSSSAVSSQAKSIQFDLKTYWKQLIFEINQKLDEAVPIQYPDQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRIAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRSVGVLYQVVDDILEEQSKKLNETDESKRRKGKSYVGVYGIEKAKEVAEELRSKAKKELEGFEKYGDQVMPLYSFVDYAADRSFSFETTS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20887851 20890158 + Lsi11G012280.1 Lsi11g01228 674395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01228 335 Pfam Polyprenyl synthetase 68 267 IPR000092 GO:0008299
Lsi11g01228 335 Gene3D Farnesyl Diphosphate Synthase 39 335 IPR008949 -
Lsi11g01228 335 ProSitePatterns Polyprenyl synthases signature 1. 119 135 IPR033749 -
Lsi11g01228 335 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 17 331 - -
Lsi11g01228 335 SFLD Isoprenoid Synthase Type I 70 312 - -
Lsi11g01228 335 PANTHER HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC 17 331 - -
Lsi11g01228 335 CDD Trans_IPPS_HT 66 327 IPR000092 GO:0008299
Lsi11g01228 335 Coils Coil 286 306 - -
Lsi11g01228 335 SUPERFAMILY Terpenoid synthases 43 308 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01228 K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] - csv:101213533 611.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01899 Lsi-Chr2:24924275 Lsi11g01228 Lsi-Chr11:20887851 2.48E-36 dispersed
Lsi10g00655 Lsi-Chr10:9116067 Lsi11g01228 Lsi-Chr11:20887851 3.48E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006949 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 2 1 2 2 1 2 2 3 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01228 Lsi_Chr11 FPKM 13.29398 13.968353 11.831499 12.405906 18.800861 17.978556 19.849152 14.45966 12.258461 13.0443