Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01239 ATGGACTTTGCTCTCAAAGAATCCAAACCAAAGAATGAAGAAGATGAACAAGCTCGAGTTCAAGTTTGGAAATACATATTTGGTTTTGCGGAAATTGCAATTGTAAAATGTGCAATTGAACTCAAAATTGCTGATACAATCGAAAGCCATGGAAGTTCAATGACACTCTCCCAATTATCCTCAGCTTTAAACTGTTCTTCATCACTTCTATACCGCATCTTGAGATTCTTAGTCCATCGTGGAATTTTCAAACAAAAAATCACTGAAGAAAATCTCATAAGCTATGGCCAAACACCTTTGTCTAGGCTGCTTGCAAGTAGCAACAACAACAGCATGGCTCCATTTCTTTTAATGGAGAGCAGTCCAGTGATGCTGGCACCATGGCATAGCCTCAGTGGTCGCATTAAAGCCAATGAAGGAACCCCATTTGAGGCTGCTCATGGCACAGATGTATGGAGCTTTGCTGAAGCTGACCCAATACACAACACAATATTCAATGATGCTATGTCATGTAGTGCAAGGGTTATTACTGTACGTGCAATACTTGAAGATTGTCCAGAAATTTTTGAAGGAGTTGGAAGTTTAGTTGATGTGGGAGGAGGACATGGAACTAGCTTGAGCATGATAGTCAAAGCTTGCCCATGGATTAAAGGCATCAACTTTGACCTTCCACATGTCATTTCTTCTTCTCAAGAATACATTAGTGTTCAACATGTTGGTGGGAATATGTTTGATTCCATTCCTAAGGCTGATGTTGCTTTCCTCATGAAAACAAAATATTTTCCATGTGACTGGGTTCTACATGATTGGGATGATGAGACATGCATCAAAATTTTGAAG 840 39.64 MDFALKESKPKNEEDEQARVQVWKYIFGFAEIAIVKCAIELKIADTIESHGSSMTLSQLSSALNCSSSLLYRILRFLVHRGIFKQKITEENLISYGQTPLSRLLASSNNNSMAPFLLMESSPVMLAPWHSLSGRIKANEGTPFEAAHGTDVWSFAEADPIHNTIFNDAMSCSARVITVRAILEDCPEIFEGVGSLVDVGGGHGTSLSMIVKACPWIKGINFDLPHVISSSQEYISVQHVGGNMFDSIPKADVAFLMKTKYFPCDWVLHDWDDETCIKILK 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21034129 21035746 - Lsi11G012390.1 Lsi11g01239 674406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01239 280 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 280 IPR029063 -
Lsi11g01239 280 Gene3D Vaccinia Virus protein VP39 105 280 IPR029063 -
Lsi11g01239 280 Pfam O-methyltransferase domain 128 280 IPR001077 GO:0008171
Lsi11g01239 280 PANTHER O-METHYLTRANSFERASE 11 280 IPR016461 GO:0008168
Lsi11g01239 280 Gene3D - 4 104 IPR036388 -
Lsi11g01239 280 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 11 280 - -
Lsi11g01239 280 SUPERFAMILY Winged helix DNA-binding domain 12 108 IPR036390 -
Lsi11g01239 280 Pfam Dimerisation domain 34 78 IPR012967 GO:0046983
Lsi11g01239 280 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 280 IPR016461 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01239 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101218114 435.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01239 Lsi-Chr11:21034129 Lsi10g00878 Lsi-Chr10:13057073 2.78E-61 dispersed
Lsi11g01238 Lsi-Chr11:21002368 Lsi11g01239 Lsi-Chr11:21034129 3.71E-109 tandem
Lsi11g01239 Lsi-Chr11:21034129 Lsi11g01240 Lsi-Chr11:21038133 1.02E-129 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01239 Lsi_Chr11 FPKM 10.725373 13.552974 6.469435 6.472614 21.149916 19.25074 21.140055 8.431342 9.099526 7.780467