Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01240 ATGAGATATAGAGAGAGACAACATCAAATAATGGAAGATAGGCACAAATTAGAGCAATCTTCATCAAAGAAGGAAGAAGATGGCCAAGCCATCATCCAAATGTGGAGATACATATTTGGATTCACAGAAATGGCAGCAATAAAATGTGCAATAGATCTCAAAATTGCTGACATTATAGAAAGCTATGGAAGCCCCATGACATTGTCACACTTATCCTCTACTTTAAATTGTTCTTCTTCTCTCCTTTATCGCATCTTGAGATTCCTCATTCATCGTGGAATCTTCAAAGAAGAATCCATTGATGAAAACCAAATAGGTTATTCACAAACACCTTTGTCTCAATTACTAGCCACCAATGTTGAGAACAGCATGGCTCCTTTGCTTTTATTGGAAACAAGTCCAGTAATGCTTGCAGCTTGGCCTAACTTGAGTGCTCACTTAAAGAACAGTGAAAGTTTTCCATTTGAGATTGCTCATGGCAAGGATTTGTGGAGCTATGCAGAAGCAAATCCTGAACATAATGTGTTGTTCAATGAGGCCATGGCTTGTTCTTCTAAGGTGATTGCTTCTGCTATACTTGAAGGGTGTCGGGAGATTTTTGATGGGGTTGAGTGTTTGGTGGATGTGGGAGGAGGAAATGGAAGAACTTTGAGCATTTTGGTGAAGGCTTTTCCATGGATCAAAGGTATTAACTTTGATCTTCCTCATGTTGTGTGTGCTTCACCACAATATGAGAATGTGCAGCATGTTGCTGGTAATATGTTTGAGTTTGTCCCAAAAGCTGATGTTGCTTTGCTCAAGTGGATTCTACATGGTTGGGATGATGAAGAATGTATTAAAATTTTGAAGAAGTGCAAGGAAGCGATTCCAAAAAGTGGAGGGAAAGTTATAATTATAGAAGCAATAATCGAAGAAAAAGGTGAAAAAAACAAGTTATCGTCAGATGTGGGATTGATGTTTGACCTAGTAATGATGGCCCATGCCAATAAAGGCAAAGAAAGAACACCTGAAGAATGGGCCTTTGTTATCAATGCAGCTGGCTTCACTCGATACACAATTACACCCATTCAAGCTATCCAATCACTTATTCAATGTTTCCCTTGA 1104 38.86 MRYRERQHQIMEDRHKLEQSSSKKEEDGQAIIQMWRYIFGFTEMAAIKCAIDLKIADIIESYGSPMTLSHLSSTLNCSSSLLYRILRFLIHRGIFKEESIDENQIGYSQTPLSQLLATNVENSMAPLLLLETSPVMLAAWPNLSAHLKNSESFPFEIAHGKDLWSYAEANPEHNVLFNEAMACSSKVIASAILEGCREIFDGVECLVDVGGGNGRTLSILVKAFPWIKGINFDLPHVVCASPQYENVQHVAGNMFEFVPKADVALLKWILHGWDDEECIKILKKCKEAIPKSGGKVIIIEAIIEEKGEKNKLSSDVGLMFDLVMMAHANKGKERTPEEWAFVINAAGFTRYTITPIQAIQSLIQCFP 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21038133 21040644 - Lsi11G012400.1 Lsi11g01240 674407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01240 367 CDD AdoMet_MTases 206 296 - -
Lsi11g01240 367 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 21 361 - -
Lsi11g01240 367 Gene3D - 16 116 IPR036388 -
Lsi11g01240 367 Gene3D Vaccinia Virus protein VP39 117 366 IPR029063 -
Lsi11g01240 367 SUPERFAMILY Winged helix DNA-binding domain 25 119 IPR036390 -
Lsi11g01240 367 Pfam Dimerisation domain 46 89 IPR012967 GO:0046983
Lsi11g01240 367 Pfam O-methyltransferase domain 140 348 IPR001077 GO:0008171
Lsi11g01240 367 MobiDBLite consensus disorder prediction 1 24 - -
Lsi11g01240 367 PANTHER O-METHYLTRANSFERASE 21 361 IPR016461 GO:0008168
Lsi11g01240 367 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 367 IPR016461 GO:0008168
Lsi11g01240 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 364 IPR029063 -
Lsi11g01240 367 PIRSF O-mtase 10 367 IPR016461 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01240 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101222999 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01235 Lsi-Chr11:20966382 Lsi11g01240 Lsi-Chr11:21038133 2.45E-119 dispersed
Lsi11g01237 Lsi-Chr11:20997935 Lsi11g01240 Lsi-Chr11:21038133 0 dispersed
Lsi11g01238 Lsi-Chr11:21002368 Lsi11g01240 Lsi-Chr11:21038133 1.02E-34 dispersed
Lsi11g01240 Lsi-Chr11:21038133 Lsi11g01410 Lsi-Chr11:22654566 9.09E-81 dispersed
Lsi11g01239 Lsi-Chr11:21034129 Lsi11g01240 Lsi-Chr11:21038133 1.02E-129 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g226 . . . . . . . . Cmo19g00776 Cmo11g01762 . . . . . Cpe04g00615 . Bhi05g01656 Tan02g0632 . . . . . . . . . . . . Cone12ag1254 Cone8ag1309 . . . Csa07g00140 . Cme01g01207 . . . . . . . Bma08g00585 . . . . Cma19g00763 . . . . . . . . . . . . . . . . . . Lsi11g01240 . Chy01g00646 Cme11g01172
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01240 Lsi_Chr11 FPKM 19.000551 20.40164 15.071498 15.154015 15.393599 15.64472 16.79151 14.678635 16.533152 16.36866