Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01250 ATGATTCAACCACATGCTTTCACATTCCAACATTTTCTTTGGTTGCATGTTAGGGTTCCATGTGGATACAAAAACAAAAATTTGTTGGTGAGAATAGAAGAATGGAGCAACAAGCCTTACTACTTGGCCATGAAATTCCTTTACCAAGGTGGACAGACAGAAATAAAAGCAATTGACATTGCTCAAGTTGGTTCTTCAGATTGGGAAGCTTTGAAGAGAAACTATGGAGCTATTTGGGATACAAGTAAAGTGCCTGAAGGAGCATTGCAACTAAGAATTGTGGTGGCTTCAGGATATGATAATGAGAATTGGATTTGGACAAATTATGAAATTCCTGCTGATTGGAAAAATGGAGAAATTTATGATACAGGGATTCAAATTGAAGATATTGCCAAAGAATTTTGCTCCTCCCCAAGAGAATGTGGGGATAGAATATGGAAATGA 444 37.16 MIQPHAFTFQHFLWLHVRVPCGYKNKNLLVRIEEWSNKPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEALKRNYGAIWDTSKVPEGALQLRIVVASGYDNENWIWTNYEIPADWKNGEIYDTGIQIEDIAKEFCSSPRECGDRIWK 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21125285 21126207 + Lsi11G012500.1 Lsi11g01250 674417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01250 147 Gene3D - 23 127 IPR036749 -
Lsi11g01250 147 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 40 123 IPR007117 -
Lsi11g01250 147 PANTHER EXPANSIN-LIKE A1-RELATED 18 139 - -
Lsi11g01250 147 PANTHER EXPANSIN-B3 18 139 - -
Lsi11g01250 147 SUPERFAMILY PHL pollen allergen 26 122 IPR036749 -
Lsi11g01250 147 Pfam Expansin C-terminal domain 30 98 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01250 Lsi-Chr11:21125285 Lsi11g01254 Lsi-Chr11:21170935 5.06E-61 dispersed
Lsi11g01250 Lsi-Chr11:21125285 Lsi11g01251 Lsi-Chr11:21130486 8.21E-60 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01250 - - cmo:103490398 258.455