Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g01255 | ATGGCTTGTGCTTGTGATCGATGTGTTTTCCAATCTAAAGCTAATGGGGGAGCATGTGGGTATGGCAACTTGGCATTGCAGTTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTTTATAAACAAGGAGCTGGTTGTGGGGCTTGCTATCAAGTAAGATGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAATAGTGATAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTGCAGATCTTTTGAATCTTGGAGTGGTTGATGTTGAATATAAGAGGGTGCCATGTGAATATCCAAATAGAAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAATCCATTCAAGTTGGCAATTAAATACTTCTATCAAGGTGGCCAAACAGACATGGTTGCTGTTGATGTAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGATAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTCACTTCTGGATACGATGGAAAATGGATTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGAGCGGTCTACGATACTGGAGTTCAAATCAACGATATTGCCAAAGAGAGCTGCCCTCCTTGGCAATGTGGTGATGCGCAATGGAAATAA | 720 | 41.94 | MACACDRCVFQSKANGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQCGDAQWK | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 21176525 | 21179146 | + | Lsi11G012550.1 | Lsi11g01255 | 674422 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g01255 | 239 | Pfam | Lytic transglycolase | 35 | 110 | IPR009009 | - | |
| Lsi11g01255 | 239 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 16 | 120 | IPR007112 | - | |
| Lsi11g01255 | 239 | Gene3D | - | 8 | 116 | IPR036908 | - | |
| Lsi11g01255 | 239 | Gene3D | - | 117 | 221 | IPR036749 | - | |
| Lsi11g01255 | 239 | PRINTS | Expansin/Lol pI family signature | 15 | 33 | IPR007118 | GO:0005576 | |
| Lsi11g01255 | 239 | PRINTS | Expansin/Lol pI family signature | 162 | 176 | IPR007118 | GO:0005576 | |
| Lsi11g01255 | 239 | PRINTS | Expansin/Lol pI family signature | 37 | 55 | IPR007118 | GO:0005576 | |
| Lsi11g01255 | 239 | PRINTS | Expansin/Lol pI family signature | 103 | 119 | IPR007118 | GO:0005576 | |
| Lsi11g01255 | 239 | PRINTS | Expansin/Lol pI family signature | 202 | 216 | IPR007118 | GO:0005576 | |
| Lsi11g01255 | 239 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 134 | 216 | IPR007117 | - | |
| Lsi11g01255 | 239 | SUPERFAMILY | PHL pollen allergen | 120 | 215 | IPR036749 | - | |
| Lsi11g01255 | 239 | PANTHER | EXPANSIN-B3 | 11 | 234 | - | - | |
| Lsi11g01255 | 239 | Pfam | Expansin C-terminal domain | 124 | 205 | IPR007117 | - | |
| Lsi11g01255 | 239 | PANTHER | EXPANSIN-LIKE A1-RELATED | 11 | 234 | - | - | |
| Lsi11g01255 | 239 | SUPERFAMILY | Barwin-like endoglucanases | 13 | 119 | IPR036908 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g00025 | Lsi-Chr5:392278 | Lsi11g01255 | Lsi-Chr11:21176525 | 9.83E-55 | dispersed | |
| Lsi06g00615 | Lsi-Chr6:8546746 | Lsi11g01255 | Lsi-Chr11:21176525 | 1.10E-69 | dispersed | |
| Lsi11g01248 | Lsi-Chr11:21117501 | Lsi11g01255 | Lsi-Chr11:21176525 | 2.83E-85 | dispersed | |
| Lsi11g01251 | Lsi-Chr11:21130486 | Lsi11g01255 | Lsi-Chr11:21176525 | 4.78E-85 | dispersed | |
| Lsi11g01252 | Lsi-Chr11:21134929 | Lsi11g01255 | Lsi-Chr11:21176525 | 1.83E-48 | dispersed | |
| Lsi11g01255 | Lsi-Chr11:21176525 | Lsi11g01258 | Lsi-Chr11:21208382 | 6.44E-113 | dispersed | |
| Lsi11g01257 | Lsi-Chr11:21194039 | Lsi11g01255 | Lsi-Chr11:21176525 | 2.07E-13 | dispersed | |
| Lsi11g01254 | Lsi-Chr11:21170935 | Lsi11g01255 | Lsi-Chr11:21176525 | 1.59E-62 | tandem | |
| Lsi11g01255 | Lsi-Chr11:21176525 | Lsi11g01256 | Lsi-Chr11:21180286 | 6.48E-140 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g01255 | - | - | csv:101209628 | 473.396 |