Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01256 ATGGTAATTGTAAGATGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAATAGTGATAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTGCAGATCTTTTGAATCTTGGAGTGGTTGATGTTGAATATAAGAGGGTGCCATGTGAATATCCAAATAGAAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAATCCATTCAAGTTGGCAATTAAATACTTCTATCAAGGTGGCCAAACAGACATGGTTGCTGTTGATGTAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGATAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTCACTTCTGGATACGATGGAAAATGGATTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGAGCGGTCTACGATACTGGAGTTCAAATCAACGATATTGCCAAAGAGAGCTGCCCTCCTTGGCAATGTGGTGATGCGCAATGGAAATAA 573 40.49 MVIVRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQCGDAQWK 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21180286 21181790 + Lsi11G012560.1 Lsi11g01256 674423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01256 190 SUPERFAMILY Barwin-like endoglucanases 3 70 IPR036908 -
Lsi11g01256 190 Gene3D - 68 172 IPR036749 -
Lsi11g01256 190 Pfam Expansin C-terminal domain 75 156 IPR007117 -
Lsi11g01256 190 Gene3D - 1 67 IPR036908 -
Lsi11g01256 190 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 85 167 IPR007117 -
Lsi11g01256 190 PRINTS Expansin/Lol pI family signature 113 127 IPR007118 GO:0005576
Lsi11g01256 190 PRINTS Expansin/Lol pI family signature 54 70 IPR007118 GO:0005576
Lsi11g01256 190 PRINTS Expansin/Lol pI family signature 153 167 IPR007118 GO:0005576
Lsi11g01256 190 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 71 IPR007112 -
Lsi11g01256 190 PANTHER EXPANSIN-LIKE A1-RELATED 4 185 - -
Lsi11g01256 190 PANTHER EXPANSIN-B3 4 185 - -
Lsi11g01256 190 SUPERFAMILY PHL pollen allergen 71 166 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01249 Lsi-Chr11:21121869 Lsi11g01256 Lsi-Chr11:21180286 2.44E-23 dispersed
Lsi11g01254 Lsi-Chr11:21170935 Lsi11g01256 Lsi-Chr11:21180286 3.57E-63 dispersed
Lsi11g01256 Lsi-Chr11:21180286 Lsi11g01258 Lsi-Chr11:21208382 6.45E-87 proximal
Lsi11g01255 Lsi-Chr11:21176525 Lsi11g01256 Lsi-Chr11:21180286 6.48E-140 tandem
Lsi11g01256 Lsi-Chr11:21180286 Lsi11g01257 Lsi-Chr11:21194039 5.81E-14 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01256 - - csv:101209628 377.867