Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01258 ATGCCTTTCTTCTTCTTCTTCCTTCTCTTCCTCTCCCTTTTCTCTTCTGCCATTGCTTGTGATCGTTGTATTCATCAAGCCAAAGCCGCCTTCTATCAAGACGAAGCCGCCGGTTTATATAGAGGCGCCTGTGGCTATGGTGATCTTACATTGCAGCTCTCAAATGGCTACTTCTCCGCCATTATGCCTCCTCTTTACAAGTATGGCGCTGGCTGTGGCGCCTGTTTTCAAGTAAGGTGCAAGAATGAGAAAATTTGCAGTAAAGAAGGGACGAAAATTATTGTTACAGATCGAAATGATAATACTTATACAGGATTGGTTCTTAGTCAGAAAGCTTTTGGTGAAATGGCTGTGAGTGGAAAAGATGGATTGCTATTGAGTTATGGAGTTGTGGATGTTGAATTCAAAAGGATTCCTTGTGAATACAATAACAAAAACTTGTTGGTTAGAGTGGAAGAATGGAGTCAATATCCTAATTTCTTAGCCATTAAATTGCTTAACCAAGGTGGCCAAACGGAGATAGTAGCGATCGATATAGCTCAGGTTGGTTATTCGAATTGGGATTATATGGGTAGGAATTACGGAGCTGTGTGGGAGACTAAAAAACCAGTCCCGAAAGGACCATTGCAATTGCGATTCGTGGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCGAAGTACGTACTTCCTGCTGACTGGAGACCTGGGTTGATTTACGACACTGGAGTTCAAATCTCCGACATTGCTAAAGAAGGTTGTCCAACAGAACAGTGTGGCGATGGACAATGGAGACGTTAG 801 42.82 MPFFFFFLLFLSLFSSAIACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSKEGTKIIVTDRNDNTYTGLVLSQKAFGEMAVSGKDGLLLSYGVVDVEFKRIPCEYNNKNLLVRVEEWSQYPNFLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPVPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGVQISDIAKEGCPTEQCGDGQWRR 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21208382 21209835 + Lsi11G012580.1 Lsi11g01258 674425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01258 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 242 IPR007117 -
Lsi11g01258 266 Gene3D - 13 141 IPR036908 -
Lsi11g01258 266 PANTHER EXPANSIN-LIKE A1-RELATED 6 261 - -
Lsi11g01258 266 SUPERFAMILY PHL pollen allergen 145 241 IPR036749 -
Lsi11g01258 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 145 IPR007112 -
Lsi11g01258 266 Pfam Expansin C-terminal domain 149 231 IPR007117 -
Lsi11g01258 266 PANTHER EXPANSIN-B3 6 261 - -
Lsi11g01258 266 Gene3D - 142 246 IPR036749 -
Lsi11g01258 266 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Lsi11g01258 266 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Lsi11g01258 266 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Lsi11g01258 266 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Lsi11g01258 266 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Lsi11g01258 266 SUPERFAMILY Barwin-like endoglucanases 9 144 IPR036908 -
Lsi11g01258 266 Pfam Lytic transglycolase 61 134 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01255 Lsi-Chr11:21176525 Lsi11g01258 Lsi-Chr11:21208382 6.44E-113 dispersed
Lsi11g01543 Lsi-Chr11:23762422 Lsi11g01258 Lsi-Chr11:21208382 6.42E-27 dispersed
Lsi11g01256 Lsi-Chr11:21180286 Lsi11g01258 Lsi-Chr11:21208382 6.45E-87 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01258 - - csv:101217243 526.939