Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01269 ATGGATTCCTTTGCTACAAACTCAAAGAAGTCATTCCATATCCGCTCAAATAGCTTGCCCTCAAAGCCACATCCAGTTGTTGTTGAAGTCAATGAACATCTTTGCAGATTGCAGGCCTTTGAAGCCACTTCTTCATCTTCTACTTTGTGGCAAAAACTTGATGGCCTTCAAGATTTGCATGATTGCATTGATAAGTTGCTTCTTTTGCCCCTCACCCATCAAGCTCTTGTTGACAAAAAATCGGTTGATGACTTGCTAGAAGGATCTCTCAAGCTCTTGGACGTGTGTGCTTCGGCTAAGGATGTGTTATCCCAAATGAAGGAATGTGCACATGAACTTGAGTTTGCTTTGCGTAGAAGAAGAGGAGATATTGTAGTTGATGTTCAAAAGTATATAAACGCAAGGAAGATGATGAAAAAGGCAATCCTCAAGGCCTTGAAGGGAATGGAAAAAACAAGTTTCCAAAAAAGTGATGAAAGTTCAGAAATTGTTAGCTTGCTAAAGAAGGCAGAAACAGTTACATATAACAGCATTGAATCCTTGTTATTATTTGTAGCAGGACCAAAGTTGTCATCAAAGATAAGCAAATGGTCTTTGGTTTCCAAGTTGATGCAACCTAAGAGAGTAGCCTGCAAAGATGATGGCACAGATGGAAATGAAGTAGAGATGGTGGATGCTACATTAAATTCAATCACCAATCACAAATTTGATTTCCTTGTGCAAGGTGAAGATGTCCAGAACTCCCTCAGGAAATTGGAGTTGTGTATTCATGACATCGAAGAGGATCTTGAGAGTCTATATCGCCATCTTATCAAAAACAGAGTCTCATTTCTTAACATCCTAAATCACTAA 852 39.08 MDSFATNSKKSFHIRSNSLPSKPHPVVVEVNEHLCRLQAFEATSSSSTLWQKLDGLQDLHDCIDKLLLLPLTHQALVDKKSVDDLLEGSLKLLDVCASAKDVLSQMKECAHELEFALRRRRGDIVVDVQKYINARKMMKKAILKALKGMEKTSFQKSDESSEIVSLLKKAETVTYNSIESLLLFVAGPKLSSKISKWSLVSKLMQPKRVACKDDGTDGNEVEMVDATLNSITNHKFDFLVQGEDVQNSLRKLELCIHDIEEDLESLYRHLIKNRVSFLNILNH 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21285341 21286192 - Lsi11G012690.1 Lsi11g01269 674436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01269 283 Pfam Protein BPS1 52 280 IPR004320 GO:0048364|GO:0048367
Lsi11g01269 283 PANTHER DUF241 DOMAIN PROTEIN 8 282 - -
Lsi11g01269 283 PANTHER BPS1-LIKE PROTEIN 8 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01269 - - - csv:116405105 465.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01261 Lsi-Chr11:21250340 Lsi11g01269 Lsi-Chr11:21285341 8.95E-71 dispersed
Lsi11g01262 Lsi-Chr11:21254729 Lsi11g01269 Lsi-Chr11:21285341 5.10E-66 dispersed
Lsi11g01266 Lsi-Chr11:21264628 Lsi11g01269 Lsi-Chr11:21285341 1.94E-39 dispersed
Lsi11g01267 Lsi-Chr11:21275240 Lsi11g01269 Lsi-Chr11:21285341 6.62E-165 dispersed
Lsi11g01269 Lsi-Chr11:21285341 Lsi11g01271 Lsi-Chr11:21288361 1.54E-114 dispersed
Lsi11g01268 Lsi-Chr11:21282118 Lsi11g01269 Lsi-Chr11:21285341 2.31E-178 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g249 . . . . . . . . Cmo19g00804 . . . . . . . . Bhi05g01612 . . . . . . Cla02g00364 Cam02g0370 . . Clacu02g0364 Cmu02g0361 Cre02g0693 . . . . . Csa07g00167 . Cme01g01167 . . . . . . . . Sed01g0640 . . . Cma19g00789 . . . . Bhi10g01228 Tan05g1071 Cmetu11g0337 . Hepe08g0329 . . . . . . . . . Lsi11g01269 . Chy01g00623 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01269 Lsi_Chr11 FPKM 40.361885 45.447071 4.114924 2.652267 38.941826 32.389961 32.96447 1.223267 1.381744 0.984277