Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01276 ATGGCTTCCAGAGCTGGAACCATGCTTTTCAGAGTACTCGTTTTCTCCGCCATCGCCGCCGTATCCGTAGCTCAGACACCACCGCGGTTCAACTGCAGCTCCACCTTGAAATGCGGTTCTCTGATCGACTACATTCCTCCAAACGCCACCACCATCGCCGCCGTGCAAAGCCTCTTCCAGGTCAAGCACCTCCTCTCCTTTCTCGGCGCTAACAACCTTCCGACCAACACCTCGTCGAGTTTTCCCTTACCGGCGTCGCAAAAAATCAAGATTCCGTTCAAATGCATGTGCGGCAACGGGACTGGTCTCTCCAACAAGCTCCCGATTTACAAAGTCCAGAGCGGCGATTCACTCGACAAAATCGCGGAAATCACTTTCGCGAGACTCGTCACTTTCCAGCAAATCGCGACCGCGAATGGAATTCCGGATCCGAGTAAAATTGAGGTAGGGCAAGAGCTGTGGATTCCTCTGCCGTGTAGCTGCGATGAAGTGGACGGGAACAAAGTCGTCCATTACGGACATGTGGTAGAAACTGGAAGCTCCGTATCGGCGATTGCCGGAAGGTATAATGTGTCGGAGGAGACGATCTTGAAGCTGAATGGAATTGCAGATGCAAGAAGTCTTCAAGCTTCTCAAGTTCTTGACATTCCTCTTAGAGCTTGTTCATCAGTGATCAGGGAAGACTCTATAGACTTCCCATTCCTTCTCTCGAACAACACGTACGATTACACGGCGAACAACTGTGTGTTTTGTCGGTGTGATGCTGCAAAAAACTGGATTCTTGACTGTACGCCATCACAGATGAAGCCATCCTCACTGAAATCATCTAATTGGTCATCATGCCCAGCCATGGCATGTGAAGGTAGCAGTTTTCTCCTTGGTAACTCAACAATTTCTGGTTGCAACACCACTACTTGTGCCTATGCTGATAACCAAAACGGTGCTTCGAGGACGAGCTCACAAGGTCTGAATTTGGCTTATATCGTCGCCTTTGCACATAATTCAGAGCTCTTTCTTTCTTTCTTGCCTTCGCGCTTCCACTTCGGATTGAAAATCGGTGTTCGTTTTCATCATCTTCCATGGAATTCTCCACCTGAAACCCTAATCCCGATTTGTACTACCAACCAGCCAGCTCTGCTTTTGTTATTCGCTTCGAATTCTAATTGCTTATGGCTTTTACTATGTGTGTTTGTGCGAGTAGATTATGAAAGTAGGATCATCATTCTTCATGATTCGGAGTTCGACCGTCTTCTTATTTTTTACGTTTACCGTTTATGTTCTGATATTTACGCGAATTTGCAGAACTTCAGTTGGAATTTGGAAATGGCTTGTCAAGTCAGCGACGGGATAGTTTGTAGTGGTGTGGGTCGAATAGTGGGGAAACAGAAAGTAATTGCTGATAAGACGTGGTCTTTTTTAACGTTGAAGCGTAGGGATGTTTGTGTAAGTAAGGTTGTAAGTAATCGAAATCGAGTTGGGGATTGGTGTTTGTCTGCGAGTTGTCGACGCAATGACCTGTTCATTTCACCTGTTGTACACCGCAGAAATGCCTCTTTTATTGTGGCTAGGAATCAGTTGGGCTCAGATTGTGAGGTAGATTCTTTGGATGTGGAGGAAAGTTTATGTCCAGAAGAAGATGATGCAATTTCCAGGGATCGGAATGGCGCAGCGCAGTGGAAAGAACTTCCCCACTATCACCAACAGCCTCTGGATGTTAAGCGTGAACTGTTGGCTCTATGTGCCTTGGAGTTGGCTTCAGCGGGTGTTTCTATAAACATATTTAACTACATATCAAAGGTTTTTAATATACCTTTACTGAGTGTAGCTACTTCTTTTGTTGCTGAGGATATTTCAAAGCATGCAATTGAAGATCCTTCATCAGATTCCTTAGAAGGCTGTACTGATGAAAAACTAGTTGCACGGTTGTCTGAGAGAAAGCAGCTATCTTCAGTTTCTACAGCTCTATTGTTGGCTGTTGGGATTGGACTTTTTGAGGCTTTGGCGTTGTATTTTGGTTCTGGAATATTTCTTAATATCATGGGCATTTCTTCAGAGTCGTCCTTGCGAATTCCAGCTCAACAATTTCTTTCACTTCGAGCCCTTGGTGCTCCTGCTGTTGTTCTTTATTTGACTCTTCAAGGAGTTTTCCGGGGAATTGGAAATTTGTTAGCTGTCTGTCTTTTTCCAATATTGATTTATTATTTTCAATTGGGTTCAACTGGAGCAGCAATTTCTACTGTTGTATCTCAATATGTTATTGCCTTTTTGATGTTATGGTTTCTCAATAAAAGAGCTGTACTATTGCCGCCAAAGTTTGGTGCATTGCAATTTGGTGTATACATGAAATCTGGTGGTTTTCTTCTTGGAAGGACTCTTTCTGTTCTAACCACTATGACGTTGGGTACATCAATGGCTGCACGCCAAGGTGCAGTGGCTATGGCTGCACACCAAATATGTATGCAAGTATGGTTAGCAGTATCTCTTCTTACTGATGCACTTGCTGCTTCAAGTCAGGCTATGATTGCAAGCTCTGTATCAAAAGGTGATTACAGGACTGCGAAGGAAGTAACTGGCTTAGCCTTAAAGGTAGGGTTGCTATCAGGTACCATATTATTTGCAATTCTTGGGGCATCTTTTGGTTCTCTTGCCACCTTGTTCACCAAGGATGCGGACGTTTTAGGAATTGTTAGAACTGGAGTCTTGATGGCGGTTGGGGCCGTCTCTTCTTCAATTTTGCTATATGCTCCTTCTGTTTTGGGTCTTCGTGGGCTGTGGTTGGGCTTGTCTCTCTTTATGGGCCTGCGTACTGCAGCTGGTTTTTTCAGATTGCTTTCAAGAAATGGTCCATGGTGGTTCCTTCACAGTAATTTCCAAAACACCAAGGTTCACACATGCCCCTAG 2901 44.67 MASRAGTMLFRVLVFSAIAAVSVAQTPPRFNCSSTLKCGSLIDYIPPNATTIAAVQSLFQVKHLLSFLGANNLPTNTSSSFPLPASQKIKIPFKCMCGNGTGLSNKLPIYKVQSGDSLDKIAEITFARLVTFQQIATANGIPDPSKIEVGQELWIPLPCSCDEVDGNKVVHYGHVVETGSSVSAIAGRYNVSEETILKLNGIADARSLQASQVLDIPLRACSSVIREDSIDFPFLLSNNTYDYTANNCVFCRCDAAKNWILDCTPSQMKPSSLKSSNWSSCPAMACEGSSFLLGNSTISGCNTTTCAYADNQNGASRTSSQGLNLAYIVAFAHNSELFLSFLPSRFHFGLKIGVRFHHLPWNSPPETLIPICTTNQPALLLLFASNSNCLWLLLCVFVRVDYESRIIILHDSEFDRLLIFYVYRLCSDIYANLQNFSWNLEMACQVSDGIVCSGVGRIVGKQKVIADKTWSFLTLKRRDVCVSKVVSNRNRVGDWCLSASCRRNDLFISPVVHRRNASFIVARNQLGSDCEVDSLDVEESLCPEEDDAISRDRNGAAQWKELPHYHQQPLDVKRELLALCALELASAGVSINIFNYISKVFNIPLLSVATSFVAEDISKHAIEDPSSDSLEGCTDEKLVARLSERKQLSSVSTALLLAVGIGLFEALALYFGSGIFLNIMGISSESSLRIPAQQFLSLRALGAPAVVLYLTLQGVFRGIGNLLAVCLFPILIYYFQLGSTGAAISTVVSQYVIAFLMLWFLNKRAVLLPPKFGALQFGVYMKSGGFLLGRTLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASSQAMIASSVSKGDYRTAKEVTGLALKVGLLSGTILFAILGASFGSLATLFTKDADVLGIVRTGVLMAVGAVSSSILLYAPSVLGLRGLWLGLSLFMGLRTAAGFFRLLSRNGPWWFLHSNFQNTKVHTCP 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21358770 21375775 + Lsi11G012760.1 Lsi11g01276 674443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01276 966 CDD LysM 174 216 IPR018392 -
Lsi11g01276 966 Pfam MatE 798 902 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi11g01276 966 SMART LysM_2 109 156 IPR018392 -
Lsi11g01276 966 SMART LysM_2 173 217 IPR018392 -
Lsi11g01276 966 Gene3D LysM domain 164 224 IPR036779 -
Lsi11g01276 966 Pfam LysM domain 110 156 IPR018392 -
Lsi11g01276 966 Pfam LysM domain 174 217 IPR018392 -
Lsi11g01276 966 PANTHER PROTEIN DETOXIFICATION 901 956 - -
Lsi11g01276 966 PANTHER PROTEIN DETOXIFICATION 579 902 - -
Lsi11g01276 966 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 579 902 IPR044644 -
Lsi11g01276 966 TIGRFAM matE: MATE efflux family protein 581 907 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi11g01276 966 SUPERFAMILY LysM domain 109 157 IPR036779 -
Lsi11g01276 966 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 901 956 IPR044644 -
Lsi11g01276 966 Gene3D LysM domain 108 163 IPR036779 -
Lsi11g01276 966 ProSiteProfiles LysM domain profile. 108 155 IPR018392 -
Lsi11g01276 966 SUPERFAMILY LysM domain 173 217 IPR036779 -
Lsi11g01276 966 CDD LysM 109 155 IPR018392 -
Lsi11g01276 966 ProSiteProfiles LysM domain profile. 172 216 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01276 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101212036 873.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02576 Lsi-Chr2:32210876 Lsi11g01276 Lsi-Chr11:21358770 2.31E-54 dispersed
Lsi08g00430 Lsi-Chr8:11809016 Lsi11g01276 Lsi-Chr11:21358770 8.93E-35 dispersed
Lsi11g01276 Lsi-Chr11:21358770 Lsi10g00578 Lsi-Chr10:8397537 1.37E-08 dispersed
Lsi11g01276 Lsi-Chr11:21358770 Lsi10g01062 Lsi-Chr10:14868676 3.04E-62 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g01276 . 24 289 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.4 1.3e-72 270.4
Lsi08g00430 . 15 385 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 73.5 1.9e-155 545.8
Lsi08g00430 . 15 356 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 68.7 2.2e-135 479.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008463 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01276 Lsi_Chr11 FPKM 3.775986 4.265599 3.083616 2.640889 3.605265 3.906995 3.686958 4.629799 4.132963 4.247896