Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01278 ATGACCTACACACCTCCAACATGGGCGACATTAGCTGCTGCTGCATTTGTTATTCTGACTCTTGTCCTCTCACTATATCTATTGTTCGAACACCTTTCTGCATATAAGAATCCAGAGGAGCAGAAGTTTTTGATTGGTGTTATCCTAATGGTCCCAACTTATGGTGTAGAATCATTTGTATCATTGGTGTACCCATCAATAAGTGTTTATCTTGAGATACTACGCGATTGCTATGAATCCTTCGCAATGTACTGCTTTGGACGATACCTGGTTGCTTGCTTGGGTGGAGAAGAAGGGACTGTTGAATTTCTAGAGAGAGAAGGACGTTCAAATACTAAGACGCCTTTATTAGAACATAGCTCAGAAAAGGGAACCATCAAGCATGTTTTCCCTATGAACCTTTTCTTAAAGCCGTGGAAAATTGGTGGATGGGTTTACCATGTTATCAAAATTGGAATCGTCCAATATATGATGATTAAGTCCCTCACTTCTATTTTAGCTGTAGTTCTTGAGAACTTTGGCGTTTATTGTGAAGGAGACTTTAATTTCAAATGCGGGTATCCTTATATGGCAGTGGTTTTAAATTTCAGTCAATCATGGGCACTGTACTGCCTGATTCAGTTCTATACAGTTACAAAGGATGAATTGGTACATATAAAGCCATTGGCCAAATTTTTGATGTTTAAATCTATAGTATTTTTGACTTGGTGGCAAGGTGTTGGAATTGCTCTCCTATCTGCCTTCGATCTGTTCAGGAGTCCTGTAGCCCAAGGGTTACAATTTAAGTCAAGTGTCCAAGATTTCATCATTTGTATAGAGATGGCCGTTGCTTCTGTGATTCACTTGTATGTATTTCCTGCAAAACCTTATGAACTTATGGGGGACCGTTATCCTGGAAGTGTTTCTGTTCTTGGCGATTATGCATCTGTCGACTGTCCTTTTGATCCAGATGAGGTCAAGGATAGTGAGCGTCCTACAAAGTTACGCCTACCCCAGCCCGACCTTGAAGACCAAGACCCTAAGATGGGAATGACAATCAAAGAGAGTGTCCGAGATGTTTTTGTTGGTGGTGGGGGCTATATTGTGAGCGACCTGAAATTCACAGTAAACCAAGCTGTTGAACCTGTGGAAAAAGGAATAACAAAGTTCAATGAAAAATTACAGAAGCTCTCCCAAAACATGAAGAAACGTGACAAGGATAAAAGAAGAACCAAGGATGACAGTTGTATTACGTCGCCCACACAAAAAGTCATTCGAGGAATTGATGACCCCCTTCTGAATGGGAGCTTTAGTGATAGTGGGGTCGTAAGGGAAAAGAAGAACCGTCGTAAATCCGGTTATATAAGTGCAGAAAGTGGTGGAGAAAGCAGCAGTGATTACGGTTATGGCAAGTACCAAGTCGGGGGCCGCCGGTGGATCACTAAAGACTAG 1431 41.58 MTYTPPTWATLAAAAFVILTLVLSLYLLFEHLSAYKNPEEQKFLIGVILMVPTYGVESFVSLVYPSISVYLEILRDCYESFAMYCFGRYLVACLGGEEGTVEFLEREGRSNTKTPLLEHSSEKGTIKHVFPMNLFLKPWKIGGWVYHVIKIGIVQYMMIKSLTSILAVVLENFGVYCEGDFNFKCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELVHIKPLAKFLMFKSIVFLTWWQGVGIALLSAFDLFRSPVAQGLQFKSSVQDFIICIEMAVASVIHLYVFPAKPYELMGDRYPGSVSVLGDYASVDCPFDPDEVKDSERPTKLRLPQPDLEDQDPKMGMTIKESVRDVFVGGGGYIVSDLKFTVNQAVEPVEKGITKFNEKLQKLSQNMKKRDKDKRRTKDDSCITSPTQKVIRGIDDPLLNGSFSDSGVVREKKNRRKSGYISAESGGESSSDYGYGKYQVGGRRWITKD 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21390931 21397393 - Lsi11G012780.1 Lsi11g01278 674445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01278 476 MobiDBLite consensus disorder prediction 434 476 - -
Lsi11g01278 476 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 2 469 IPR005178 -
Lsi11g01278 476 Pfam Organic solute transporter Ostalpha 11 290 IPR005178 -
Lsi11g01278 476 Coils Coil 380 400 - -
Lsi11g01278 476 MobiDBLite consensus disorder prediction 315 340 - -
Lsi11g01278 476 MobiDBLite consensus disorder prediction 390 409 - -
Lsi11g01278 476 MobiDBLite consensus disorder prediction 390 410 - -
Lsi11g01278 476 PANTHER PROTEIN LAZ1 2 469 IPR031171 GO:0009626
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01278 - - - csv:101217133 883.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00526 Lsi-Chr8:13203288 Lsi11g01278 Lsi-Chr11:21390931 1.13E-144 dispersed
Lsi11g00149 Lsi-Chr11:1658718 Lsi11g01278 Lsi-Chr11:21390931 5.06E-99 dispersed
Lsi11g00674 Lsi-Chr11:7092616 Lsi11g01278 Lsi-Chr11:21390931 3.98E-41 dispersed
Lsi11g01278 Lsi-Chr11:21390931 Lsi02g00708 Lsi-Chr2:6341711 3.54E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g279 . . . . . Bpe12g00146 . . Cmo19g00812 Cmo11g01781 . . . . . . Cpe15g00635 Bhi05g01598 . . . . . . Cla02g00356 Cam02g0364 Cec02g0365 Cco02g0372 Clacu02g0356 Cmu02g0353 Cre02g0683 . . . . . Csa07g00177 . Cme01g01155 . Blo13g00478 . . . . . Bma08g00721 . . . Cma11g01338 . Car11g01409 Car19g00608 . . . . . . . . . . . . . . . . Lsi11g01278 . Chy01g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007981 0 8 1 1 1 1 2 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 0 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01278 Lsi_Chr11 FPKM 11.082263 11.374766 3.112376 3.041526 13.182061 12.847691 13.690057 5.168383 4.49523 4.231666