Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01279 ATGGGTGCCGACGGTGATTCCAGTGAGCACCGGGTTGATGGCGATGGTGAAGAAGGAGGAGTTAGTGTTACAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCGGTGACGACGACTCTAGATTCCACGGTTGGGACATTCAAATCAATTCTTGCTCAGAATTGTGATATCCCAGCTGATCAACAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAGACCTTAGTTAGTTACGGTTTACAGGCAGATCACACTATTCACATGGTTCGTGGTTTTGCCCAAGCTTCATCAACACCTTCTGCGCCTGCTTCGAATGTTAGTAGTAGAAGTTCTGACACTGCTCCTGGTGTCACAAGAGGTGTTGGTTCTAATGAGAGTGGTGCTCTTGGAAACGCTGGCCTTGGTGCATCATTATTTCCTGGACTGGGTTTCAATCCTCTCGGTGGGGGTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAACTTGATGAATAACCCTGACTTGATGCGAACCTTGATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTCAATGACCCTGGTATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCCGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATCGAATCTTCTCCCGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAGGAGCCATTTCTAAATGCAACAACGATGGCTGGAAATGCTGGAAATGATTTGAGTTCAAACCCATTTGCTGCTCTCTTGGTGAACCAAGGGGGTGCACAAGCGAGGAATGAGTCCAATAATTCTTCAACTACGGGAACAGAAACAACAGGAACTGCTGCTCCAAATACAAATCCACTTCCTAATCCGTGGGGTAATAATGCTAGTGGAGGAACTCAGACCACAACCACACAGCCTACCCCAGCAGGTGATGCAAGGGCTCCTGGTATTGGGGGTTTAGGAGGGGCTGGTCGTACAAATGTGGATCGTTTTGCTGGTGCTGTGCCAGACCCGACTCAGTTAAACCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGCCTGCTCTCCAATCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGCTACGAAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCAATTCAGCAGACCCTCCTCTCTACCTTAAATCGACAGCCAACATCTCAAGATTCTGCTCAAACAGGTGCTGCTGCAGGTATGCTGATGGATAATTTCTTACATATGATCACTGCTGGATTGGAGATGTTAATGAACCTGTTTGGTGGGCTTGGTGCTGGCGGGTTGGCTGTTCCAAACAATCCCAACGTGCCCCCAGAAGAACTATATGCAACTCAACTTTCACAGCTCCAAGAGATGGGTTTCTTCGACACACAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAATGTCCATGCCGCTGTCGAGCGACTGCTGGGAAATCTCGGGCAGTAA 1680 46.49 MGADGDSSEHRVDGDGEEGGVSVTVNIRCSNGSKFSVTTTLDSTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVSSRSSDTAPGVTRGVGSNESGALGNAGLGASLFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDLSSNPFAALLVNQGGAQARNESNNSSTTGTETTGTAAPNTNPLPNPWGNNASGGTQTTTTQPTPAGDARAPGIGGLGGAGRTNVDRFAGAVPDPTQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQTLLSTLNRQPTSQDSAQTGAAAGMLMDNFLHMITAGLEMLMNLFGGLGAGGLAVPNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21405224 21410177 - Lsi11G012790.1 Lsi11g01279 674446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01279 559 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515
Lsi11g01279 559 SUPERFAMILY UBA-like 513 555 IPR009060 GO:0005515
Lsi11g01279 559 MobiDBLite consensus disorder prediction 1 20 - -
Lsi11g01279 559 Gene3D - 499 558 - -
Lsi11g01279 559 PRINTS Ubiquitin signature 75 96 IPR019956 -
Lsi11g01279 559 PRINTS Ubiquitin signature 54 74 IPR019956 -
Lsi11g01279 559 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 559 - -
Lsi11g01279 559 SMART uba_6 517 555 IPR015940 -
Lsi11g01279 559 MobiDBLite consensus disorder prediction 99 127 - -
Lsi11g01279 559 CDD UBA_PLICs 517 555 - -
Lsi11g01279 559 CDD Ubl_Dsk2p_like 23 95 - -
Lsi11g01279 559 MobiDBLite consensus disorder prediction 299 374 - -
Lsi11g01279 559 Pfam UBA/TS-N domain 517 553 IPR015940 -
Lsi11g01279 559 Pfam Ubiquitin family 25 92 IPR000626 GO:0005515
Lsi11g01279 559 SUPERFAMILY Ubiquitin-like 20 109 IPR029071 -
Lsi11g01279 559 SMART ubq_7 23 94 IPR000626 GO:0005515
Lsi11g01279 559 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 512 556 IPR015940 -
Lsi11g01279 559 MobiDBLite consensus disorder prediction 99 123 - -
Lsi11g01279 559 Gene3D - 195 253 - -
Lsi11g01279 559 SMART CBM 200 239 IPR006636 -
Lsi11g01279 559 SMART CBM 411 446 IPR006636 -
Lsi11g01279 559 SMART CBM 148 187 IPR006636 -
Lsi11g01279 559 SMART CBM 368 407 IPR006636 -
Lsi11g01279 559 PANTHER UBIQUILIN 1 559 - -
Lsi11g01279 559 MobiDBLite consensus disorder prediction 1 17 - -
Lsi11g01279 559 MobiDBLite consensus disorder prediction 299 349 - -
Lsi11g01279 559 Gene3D - 21 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01279 K04523 UBQLN, DSK2; ubiquilin - csv:101210644 886.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01060 Lsi-Chr7:15965444 Lsi11g01279 Lsi-Chr11:21405224 1.83E-30 dispersed
Lsi07g01061 Lsi-Chr7:15966748 Lsi11g01279 Lsi-Chr11:21405224 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01279 Lsi_Chr11 FPKM 4.003163 4.124915 13.441666 12.825553 1.532729 1.62794 2.276181 37.599419 39.164005 36.106331
Lsi11g01279 Lsi_Chr11 FPKM 4.694349 4.341613 13.141441 11.339166 1.103673 1.626003 1.432558 43.166504 44.229668 41.242481
Lsi11g01279 Lsi_Chr11 FPKM 3.87258 3.401579 11.080048 9.634324 0.876212 1.298018 1.240411 35.03915 36.511372 32.758881