Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01280 ATGAATGCACATATAAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGACCTCACCATTCCTTTTGAACTCCAAATGGTCGAAACTGCAACGTCTTTCGACTCCAATCGTCGCCGTCCCCGCAAGAAACGGTCAAGAATCGAAAAGGACTCCACCGACACCGCCGTCGTCGCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCGCCGAAGATCACTCCTCCATGTACTGAGTGTGGGAAGAGATTTTGGTCAGATAAAGCGCTTTTCGGTCATATGAGGTGTCATCCTGAACGTCAATGGCGAGGGATTAATCCGCCGCTTAATTTCCGTCGTCCGATTTCGGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGAATCTTCGTTTACTGAAGAAGATCAAGACATCGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCAATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATAGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTAGGGCATGAGAGGAGTATTAATCTGGAGAATAAAATGTCGTTGATGATTTTAGGAACAACAGAGCATAAATGTAGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGCTTTGTTACTTTCGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATCTTCTTCAGGTCTCACTCTGGATCTCAGGTTGGGCCTTTGA 855 44.8 MNAHINSVSIASSSSSPLDLTIPFELQMVETATSFDSNRRRPRKKRSRIEKDSTDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRPISVSPFSPNIATDLEESSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSLMILGTTEHKCSSGHKRFHWENNAAAEEGFVTFDLNMPAPLEDGSSSSSSSGLTLDLRLGL 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21415643 21416497 + Lsi11G012800.1 Lsi11g01280 674447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01280 284 Pfam C2H2-type zinc finger 80 102 - -
Lsi11g01280 284 Pfam C2H2-type zinc finger 164 188 - -
Lsi11g01280 284 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Lsi11g01280 284 MobiDBLite consensus disorder prediction 264 284 - -
Lsi11g01280 284 MobiDBLite consensus disorder prediction 264 278 - -
Lsi11g01280 284 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 27 284 - -
Lsi11g01280 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Lsi11g01280 284 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 27 284 - -
Lsi11g01280 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
Lsi11g01280 284 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lsi11g01280 284 MobiDBLite consensus disorder prediction 35 73 - -
Lsi11g01280 284 SMART c2h2final6 165 187 IPR013087 -
Lsi11g01280 284 SMART c2h2final6 78 100 IPR013087 -
Lsi11g01280 284 SUPERFAMILY beta-beta-alpha zinc fingers 79 187 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00828 Lsi11g01280 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00629 Lsi-Chr10:8771475 Lsi11g01280 Lsi-Chr11:21415643 4.10E-24 dispersed
Lsi10g00828 Lsi-Chr10:11636937 Lsi11g01280 Lsi-Chr11:21415643 3.28E-28 dispersed
Lsi11g01280 Lsi-Chr11:21415643 Lsi02g00106 Lsi-Chr2:860629 9.07E-11 dispersed
Lsi11g01280 Lsi-Chr11:21415643 Lsi10g01220 Lsi-Chr10:16482888 4.93E-12 transposed
Lsi11g01280 Lsi-Chr11:21415643 Lsi03g01988 Lsi-Chr3:31251767 3.74E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26199 PF13912 zf-C2H2_6 6.90E-10 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01280 - - cmax:111468261 370.548