Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01280 | ATGAATGCACATATAAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGACCTCACCATTCCTTTTGAACTCCAAATGGTCGAAACTGCAACGTCTTTCGACTCCAATCGTCGCCGTCCCCGCAAGAAACGGTCAAGAATCGAAAAGGACTCCACCGACACCGCCGTCGTCGCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCGCCGAAGATCACTCCTCCATGTACTGAGTGTGGGAAGAGATTTTGGTCAGATAAAGCGCTTTTCGGTCATATGAGGTGTCATCCTGAACGTCAATGGCGAGGGATTAATCCGCCGCTTAATTTCCGTCGTCCGATTTCGGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGAATCTTCGTTTACTGAAGAAGATCAAGACATCGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCAATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATAGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTAGGGCATGAGAGGAGTATTAATCTGGAGAATAAAATGTCGTTGATGATTTTAGGAACAACAGAGCATAAATGTAGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGCTTTGTTACTTTCGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATCTTCTTCAGGTCTCACTCTGGATCTCAGGTTGGGCCTTTGA | 855 | 44.8 | MNAHINSVSIASSSSSPLDLTIPFELQMVETATSFDSNRRRPRKKRSRIEKDSTDTAVVASKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRPISVSPFSPNIATDLEESSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLLGHERSINLENKMSLMILGTTEHKCSSGHKRFHWENNAAAEEGFVTFDLNMPAPLEDGSSSSSSSGLTLDLRLGL | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21415643 | 21416497 | + | Lsi11G012800.1 | Lsi11g01280 | 674447 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01280 | 284 | Pfam | C2H2-type zinc finger | 80 | 102 | - | - | |
Lsi11g01280 | 284 | Pfam | C2H2-type zinc finger | 164 | 188 | - | - | |
Lsi11g01280 | 284 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 167 | 187 | IPR013087 | - | |
Lsi11g01280 | 284 | MobiDBLite | consensus disorder prediction | 264 | 284 | - | - | |
Lsi11g01280 | 284 | MobiDBLite | consensus disorder prediction | 264 | 278 | - | - | |
Lsi11g01280 | 284 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 27 | 284 | - | - | |
Lsi11g01280 | 284 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 105 | IPR013087 | - | |
Lsi11g01280 | 284 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 27 | 284 | - | - | |
Lsi11g01280 | 284 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 165 | 192 | IPR013087 | - | |
Lsi11g01280 | 284 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Lsi11g01280 | 284 | MobiDBLite | consensus disorder prediction | 35 | 73 | - | - | |
Lsi11g01280 | 284 | SMART | c2h2final6 | 165 | 187 | IPR013087 | - | |
Lsi11g01280 | 284 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - | |
Lsi11g01280 | 284 | SUPERFAMILY | beta-beta-alpha zinc fingers | 79 | 187 | IPR036236 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi10g00828 | Lsi11g01280 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g00629 | Lsi-Chr10:8771475 | Lsi11g01280 | Lsi-Chr11:21415643 | 4.10E-24 | dispersed | |
Lsi10g00828 | Lsi-Chr10:11636937 | Lsi11g01280 | Lsi-Chr11:21415643 | 3.28E-28 | dispersed | |
Lsi11g01280 | Lsi-Chr11:21415643 | Lsi02g00106 | Lsi-Chr2:860629 | 9.07E-11 | dispersed | |
Lsi11g01280 | Lsi-Chr11:21415643 | Lsi10g01220 | Lsi-Chr10:16482888 | 4.93E-12 | transposed | |
Lsi11g01280 | Lsi-Chr11:21415643 | Lsi03g01988 | Lsi-Chr3:31251767 | 3.74E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26199 | PF13912 | zf-C2H2_6 | 6.90E-10 | CL0361 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01280 | - | - | cmax:111468261 | 370.548 |