Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01282 ATGGACCGAGCAGGCAGCCTCTCAAAAGCCATTTACCTGAATTCCAACAATCCCAAGCTAGCATGGCTTCTCTTCAAGCGAATTCTCTCTTCCCCGATCGCCGCTTCCTCTTCCTTCTTCAAAACCTCTCTTCAATCTGTACCCATTATTGCCCGCATCCTAATCACTGCAAAAATGCACCCACAGATCGATCACCTTCACCAACTCCTCTTGTCGCAGCAACAGGATTTTGCTCATCCATCTGGATTTTCACTCGTTCGAGCGTTGGCTGATTTGGGTCTCTTCGAAAACGCCATTTCTCAGTTTCGATCGCTTCGAGACAGGTTTCCTCATGACCCTCCTCCTATTTCTTTCTATAATCTGCTGTTTCGGTGTTCTTTGAAGGAGGGTCGTGTTGGTTGTGTGATTTGGCTATATAAGGATATGGTTGTTGCGAGAGTTAACCCACAGACTTATACTTTTAATCTGTTGATAAGTGCGCTTTGTGAAATGGGGTACTTGGAGAATGCACGGGAAGTGTTTGATAAAATGTCTGAAAAAGGGTGTAAGCCTAATGAGTTTAGTCTTGGGATTTTGGTTCGTGGGTATTGTAGAGCTGGGCTCTATTATCGAGGGATTGAGCTTTTGAACGAGATGAGGAGCTCTGGTGCTCTTCCTAATAGGGTTGCGTACAATACTGTGATATCTTCTCTTTGTGGAGGTAGTCAGACTGGGGAGGCTGAGAAATTGGTGGAAAGGATGAGAGAGGTTGGTCTTTCTCCGGATATTGTAACTTTCAATTGTAGAATTGCTGCCCTCTGTAAATCTGGGCAAATTTTAGAAGCTTCCAGAATTTTTAGAGATATGCAAATAGATGAAGAGTTGAGGTTACCGCAGCCTAATACTGTAACATATAATTTAATGCTAGAAGGATTTTGTAATAAAGGAATGTTCGAGGAATCCAAGGCTCTCTTTGATTCTATGAAAAAATCTGAAACTCTTTTGAGCTTAGAAAGCTATAACATATGGTTGTTAGGTTTGGTTAGAAGTGGAAAGCTCCTTGAAGCTTGTTTAATTCTTAATGAGATGGCAGAAAAGAGTATAAAGCCCAATCTTTACTCCTATAACATTTTGATATATGGACTTTGTAAATATGGAATGTTTTCTGATGCAAGATCTGTAATAGGCCTAATGAGAGAGAGTGGTGTTGCTCCAAATACTGTAACTTATAGTACCTTATTGCATGGATACTGCTGTAGAGGAAAGATACTTGAAGCCAACTATGTCCTTCGTGAAATGATACAGGTTGGTTGCTTTCCAAATATGTATACTTGTAACATCCTGCTTCACAGCCTGTGGAAAGAGGGGAGGGCATCAGAGGCAGAAGAGTTGCTACAAAAGATGAATGAAAGAGGTTATGGCTTGGATAATGTAACTTGTAATACAATGATTAATGGCCTCTGTAAAACTGGGAATCTGGACAAAGCTATTGAAATAGTGAGTGGCATGTGGACACATGGAAGCGCTTCTCTTGGTAATCTAGGGAACTCTTTTATTGGTCTTTTTGATATTGGCAATAGTGGGAAAAAGTGTTTGCCTGACTTGATCACATATGCAACCATAATAAGTGGGTTATGCAAGGTAGGGCGTGTTGATGAAGCAAAAAAGAAGCTTCTGGAGATGATTGGAAAAAAGCTCTCTCCTGATTCACTAATATTTGATACTTTCATACATAGTTACTGTAAACAAGGAAAGTTATCGTCTGCTTTTAGAGTTCTCAAAGAAATGGAGAAAAAAGGTTGCAACAAGAGCCTTCGAACGTATAATTCACTGATCCAGGGTTTAGGTGGTAAAAATCAAATATTTGAAATATATGGATTGATGGATGAGATGAGAGAAAGAGAAATTTTTCCTGATGTTTACACTTATAATAGTATTATTAGTTGCCTATCTGAAGGTGGGAAACTCAAAGATGCCACTTGTCTTTTGGATGAAATGCTGCAGAAGGGGATATCTCCTAATATATGTACATTTAGAATTTTAATTGGAGCTTTCTTCAAGGCTTGCGACTTTGGAGCCGCTCAAGAATTATTTGACATAGGTTTAAGCCTATGTGGCCATAAGGAATCCTTGTATAGTTTTATGTTCAATGAGCTACTAGCTGGAGGTGAAACATCCAAGGCTAAAGAGCTGTTTGAAGCTGCATTAGATAGATCTCTAGCCTTGAAGAATTTTCTTTATAGGGACCTGATTGAAAGGCTTTGCAAGGACGGAAAGTTAGATGATGCTAGTTTCATTCTTCAAAAGATGATGGATAAACGGTGTAGGTTTGACCCTGCATCATTCATGCCAGTGATTGATGGATTGGGTAAAAGGGGGAGTAAGCATGCGGCTGATGAATTTGCAGAAAGGATGATGGAAATGGCTTCAGAAACCGATATCAACCCACATGAGAATAAGAATATCCGAGGAAGATTGAATAATAATGATGAAAGCGATTGGCGCAAGATAGTTCACAGAAATGATGGCAGTGGGATTGCACAGAAAGCTCTTAAGCGTGTGTTGAAAGGATTGGGTCAAGGAAGCAAACATGGAAACATGCTAAAATCTGCCGAGGCATCAGATCTTCAAGTTAGGGAGCCAAGGACATCAGTACATCAGGATGGATTGCAATTTCCATTGGGCGCAGAGTCTGATAGTTTGGCTGTGAGATGGTCTATATATTTCCTTATACTCTTCAAGATTCTGCTATGTCCCGCTTTGTTCAGCATTCCAACAAGTTACATTTCCACCATTCGAGGTGTTAATAGTGGCAGCGTGTTGCCTTGCTCCAGTAGGGCACTGGCTTCCAGAACCAGAAGTCTGAGTACATTCGAAGAGGTTGGGGACTTTGCAGAGGCTCCATGGCTGAATGAGCCACTTTCAGCTTGA 2910 40.72 MDRAGSLSKAIYLNSNNPKLAWLLFKRILSSPIAASSSFFKTSLQSVPIIARILITAKMHPQIDHLHQLLLSQQQDFAHPSGFSLVRALADLGLFENAISQFRSLRDRFPHDPPPISFYNLLFRCSLKEGRVGCVIWLYKDMVVARVNPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLYYRGIELLNEMRSSGALPNRVAYNTVISSLCGGSQTGEAEKLVERMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEELRLPQPNTVTYNLMLEGFCNKGMFEESKALFDSMKKSETLLSLESYNIWLLGLVRSGKLLEACLILNEMAEKSIKPNLYSYNILIYGLCKYGMFSDARSVIGLMRESGVAPNTVTYSTLLHGYCCRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEELLQKMNERGYGLDNVTCNTMINGLCKTGNLDKAIEIVSGMWTHGSASLGNLGNSFIGLFDIGNSGKKCLPDLITYATIISGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIHSYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGGKNQIFEIYGLMDEMREREIFPDVYTYNSIISCLSEGGKLKDATCLLDEMLQKGISPNICTFRILIGAFFKACDFGAAQELFDIGLSLCGHKESLYSFMFNELLAGGETSKAKELFEAALDRSLALKNFLYRDLIERLCKDGKLDDASFILQKMMDKRCRFDPASFMPVIDGLGKRGSKHAADEFAERMMEMASETDINPHENKNIRGRLNNNDESDWRKIVHRNDGSGIAQKALKRVLKGLGQGSKHGNMLKSAEASDLQVREPRTSVHQDGLQFPLGAESDSLAVRWSIYFLILFKILLCPALFSIPTSYISTIRGVNSGSVLPCSSRALASRTRSLSTFEEVGDFAEAPWLNEPLSA 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21425773 21430707 - Lsi11G012820.1 Lsi11g01282 674449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01282 969 Pfam PPR repeat 740 768 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Lsi11g01282 969 Pfam Pentatricopeptide repeat domain 620 678 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Lsi11g01282 969 Gene3D Tetratricopeptide repeat domain 204 287 IPR011990 GO:0005515
Lsi11g01282 969 Gene3D Tetratricopeptide repeat domain 378 516 IPR011990 GO:0005515
Lsi11g01282 969 Gene3D Tetratricopeptide repeat domain 517 591 IPR011990 GO:0005515
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Lsi11g01282 969 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 6 827 - -
Lsi11g01282 969 PANTHER OS02G0132100 PROTEIN 6 827 - -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Lsi11g01282 969 Pfam PPR repeat 523 554 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 600 633 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 190 220 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 366 400 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 152 186 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 401 434 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 529 563 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 566 594 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 332 364 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 257 283 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 471 500 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 296 324 IPR002885 -
Lsi11g01282 969 TIGRFAM PPR: pentatricopeptide repeat domain 634 668 IPR002885 -
Lsi11g01282 969 Pfam PPR repeat family 219 268 IPR002885 -
Lsi11g01282 969 Pfam PPR repeat family 367 411 IPR002885 -
Lsi11g01282 969 Pfam PPR repeat family 149 198 IPR002885 -
Lsi11g01282 969 Pfam PPR repeat family 433 482 IPR002885 -
Lsi11g01282 969 Pfam PPR repeat family 293 335 IPR002885 -
Lsi11g01282 969 Pfam PPR repeat family 561 608 IPR002885 -
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Lsi11g01282 969 Gene3D Tetratricopeptide repeat domain 46 203 IPR011990 GO:0005515
Lsi11g01282 969 Gene3D Tetratricopeptide repeat domain 288 377 IPR011990 GO:0005515
Lsi11g01282 969 Gene3D Tetratricopeptide repeat domain 592 693 IPR011990 GO:0005515
Lsi11g01282 969 Gene3D Tetratricopeptide repeat domain 695 812 IPR011990 GO:0005515
Lsi11g01282 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01282 - - - csv:101217754 1548.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00094 Lsi-Chr10:1517396 Lsi11g01282 Lsi-Chr11:21425773 1.48E-13 dispersed
Lsi11g01282 Lsi-Chr11:21425773 Lsi04g00813 Lsi-Chr4:7736292 2.47E-74 dispersed
Lsi11g01282 Lsi-Chr11:21425773 Lsi04g00798 Lsi-Chr4:7544236 2.56E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g286 . . . . . . . . . . . . . . Sed05g2175 . . Bhi05g01588 Tan02g0581 Cmetu01g0188 Lac12g0483 Hepe02g0372 . . Cla02g00351 Cam02g0359 Cec02g0360 Cco02g0366 Clacu02g0351 Cmu02g0348 Cre02g0679 Cone12ag1274 . . . . Csa07g00182 . Cme01g01150 Blo04g00604 . . Bda14g00645 Bpe15g00786 . Bma03g00636 . . . . . . . Car19g00612 . . . . . . . . . . . . . . . . Lsi11g01282 . Chy01g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012269 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01282 Lsi_Chr11 FPKM 19.563196 22.520676 25.021778 25.620283 16.154129 12.995779 16.891823 33.930355 33.667419 34.164318