Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01285 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTCAAGGAGCAGCAAGAGCAAGAACAGCAAGACCACAAGCAACAGCAAAACCACCAAACCAAACGAATCAACAACTCCACCCCAATTTCCAACCCTAATTACGCTTCCCCAACTCCCTTGCGGCGATCTACTCGCCGGAATCCCAACACCGACGAACTCACTCCCGATGAGGTCGCTGATGACCAGGAGGATGCCGAATACAACGAAGAATTGGCTGAGAACCGCCGCGAGAAAAAACTCAAGCTCGTCCTTAGATTGCACTCCCAGAAATCCCCAGTCAATTCCTCGTCTCTCAATTCTTGTGGTTCCGATTCTAATGCGGAGGGGGATGGTAATGCTGCCTCGATTAACAAGAAGCGGAAGATCGGTTCGATTGGGGAGGGATCTAGGATCCAAGACTCCCAGAAGGGTGAAAAGTCCATTTCTGCTACAAACCCACCAGAAACCCTTCAAGAAGCGCATATGGATTCGGGACCCTCGACGCCTTTACCAGATAAGAAGCTTTTAGTCTTCATCCTCGACAGGCTTCAAAAGAAGGACGTCTATGGTGTGTTTTCCGAACCAGTGGACCCCAACGAGCTTCCAGACTATCACGAAATTATAGATCATCCGATGGATTTTGGGACTGTACGGGAGAAGCTTACTTCTGGAGCTTATAGCACCTTGGAACAGTTTGAAAAAGACGTTCTCTTAATCAGTTCGAATGCAATGCAATATAATTCCCCAGATACTATATATTTTCGACAGGCACGTACCATACAAGAGTTGGCAAAAAAGAATTTTAAGAACTTGAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTGGTGAGAAGGGGTAGACCACCGAGCAAAAATTTTAAAAAACCATTAGGTAGACCTCCTTTGGAACGTGCTGGTTCTGAGTTTTCCCCAGATGCCACTCTTGCTACTGGTGGTGAAAACACAAATCGGTCCAGCGATTTGAGGAAAGGACTTCATAATTTGGAAAAGACTAGTTTTGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCTAATAGTGATGCTGCATTTAATTTGTTTAACCAGAGCAGATTTGATAGAAGCGAGGATATTACAGGTTCTGCACTGAGATTTAATTCCGTGAGACAGGGGAAAAGACCTATCGTCTCTGAGGAGAATAGGCGTAATACTTATAAGCAATTTCAAGCGGCAACTGCTTTGCTAGAGCCCTCTGTGTTGAATACATTTGATAGAGAGAAGAAGGTTTTAATGCCAGTTGGACTTTTCTTGGAGCATGCTTACGCACGAAGCATCGCTCGATTTGCTGCAGATCTTGGATCTGTAGCTTGGACAGTTGCTTCTAAGAAGATTGAAAGATCTCTGCCTTCAGGTTCAAGTTTTGGTCCTGGATGGGTTGTAGAAAATGATACCACACCAAAGAGGGTGTTTCTACCACAAGCTGAACTCGGTCAAATATCGACGTTGCAGCCCTTTCTTGGAAATGGAAGTTCGGATCCAGATGTAAAGCCTCTTACTCCTGAACAAAAGGGGGTTCGATCATCCGACAACTCTGAAGCTGATACATCATCCAAGATGCATGACGAGCCTTCTCATGCCCCCAGTTCAGATGGCCAATTAACCAGACCTCTCACTGAGTTTGCTGCAGCTTCGTCATCACCATCAAGTACTCGACAATCTTCTGAGCCGTGCAAGGGACAGGCGGAAACAGTTGAAGGATTGAATCCCAGTAGTGATTATAATGTATTGGAAAGTAGTATTCCAATCTCTAGGCCGTCATTTCAGAAACACCAGAGTCCAACAATCCGCCCTGGTATGAATGGATTCAATGGTGCTTATGGTTTTGATCTCTCTGCTCACAGGGGGAAACTAATAGGACTGTCCGAGCCCGCTGGTGTAAAGCCTCAGTCATCTCAAATGCTTGAGATGATCTCCAGGACTAATGCTAATTTCATCCTTCCAGCAACGCCAACCAGCCTGAATCTGAAAGAACCAAAATGTCCCGAAAACAATCCTAGTACAACAAACTCTTCCAATTCATTGGTTGGGTCGGGGAATGACGCTCTTGTCAACCCAGCAGTCGGTCCCCATTCACGAACACATTGGCAGCAGGGGCCATCACCACCAGAGAAAACAGATGCAGTAGTAACAACAATATACAAACCGGAATCGGTTCCCCCGGACCTGAATGTGAGATTTAAATCTCCAGGATCTCCTAGCTCTAGTAAGGTGGACTCTGCTCACCCTGATTTGGTTTTACAGCTATGA 2343 45.67 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEQQDHKQQQNHQTKRINNSTPISNPNYASPTPLRRSTRRNPNTDELTPDEVADDQEDAEYNEELAENRREKKLKLVLRLHSQKSPVNSSSLNSCGSDSNAEGDGNAASINKKRKIGSIGEGSRIQDSQKGEKSISATNPPETLQEAHMDSGPSTPLPDKKLLVFILDRLQKKDVYGVFSEPVDPNELPDYHEIIDHPMDFGTVREKLTSGAYSTLEQFEKDVLLISSNAMQYNSPDTIYFRQARTIQELAKKNFKNLRQDSDDNEPEPKVVRRGRPPSKNFKKPLGRPPLERAGSEFSPDATLATGGENTNRSSDLRKGLHNLEKTSFADFSGRFSFSSNSDAAFNLFNQSRFDRSEDITGSALRFNSVRQGKRPIVSEENRRNTYKQFQAATALLEPSVLNTFDREKKVLMPVGLFLEHAYARSIARFAADLGSVAWTVASKKIERSLPSGSSFGPGWVVENDTTPKRVFLPQAELGQISTLQPFLGNGSSDPDVKPLTPEQKGVRSSDNSEADTSSKMHDEPSHAPSSDGQLTRPLTEFAAASSSPSSTRQSSEPCKGQAETVEGLNPSSDYNVLESSIPISRPSFQKHQSPTIRPGMNGFNGAYGFDLSAHRGKLIGLSEPAGVKPQSSQMLEMISRTNANFILPATPTSLNLKEPKCPENNPSTTNSSNSLVGSGNDALVNPAVGPHSRTHWQQGPSPPEKTDAVVTTIYKPESVPPDLNVRFKSPGSPSSSKVDSAHPDLVLQL 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21456314 21461549 - Lsi11G012850.1 Lsi11g01285 674452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01285 780 MobiDBLite consensus disorder prediction 686 711 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 152 180 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 686 780 - -
Lsi11g01285 780 Gene3D - 187 304 IPR036427 GO:0005515
Lsi11g01285 780 SMART bromo_6 182 290 IPR001487 GO:0005515
Lsi11g01285 780 CDD Bromodomain 189 283 - -
Lsi11g01285 780 ProSitePatterns Bromodomain signature. 207 263 IPR018359 -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 286 346 - -
Lsi11g01285 780 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 780 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 1 95 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 17 42 - -
Lsi11g01285 780 Coils Coil 22 42 - -
Lsi11g01285 780 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 780 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 286 305 - -
Lsi11g01285 780 Pfam Bromodomain 196 275 IPR001487 GO:0005515
Lsi11g01285 780 MobiDBLite consensus disorder prediction 113 186 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 43 68 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 1 16 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 559 604 - -
Lsi11g01285 780 ProSiteProfiles Bromodomain profile. 201 271 IPR001487 GO:0005515
Lsi11g01285 780 MobiDBLite consensus disorder prediction 515 604 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 722 736 - -
Lsi11g01285 780 MobiDBLite consensus disorder prediction 113 136 - -
Lsi11g01285 780 SUPERFAMILY Bromodomain 182 294 IPR036427 GO:0005515
Lsi11g01285 780 MobiDBLite consensus disorder prediction 78 92 - -
Lsi11g01285 780 PRINTS Bromodomain signature 252 271 IPR001487 GO:0005515
Lsi11g01285 780 PRINTS Bromodomain signature 204 217 IPR001487 GO:0005515
Lsi11g01285 780 PRINTS Bromodomain signature 234 252 IPR001487 GO:0005515
Lsi11g01285 780 PRINTS Bromodomain signature 218 234 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01285 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1272.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01581 Lsi-Chr10:20306381 Lsi11g01285 Lsi-Chr11:21456314 3.41E-10 dispersed
Lsi11g01285 Lsi-Chr11:21456314 Lsi01g00196 Lsi-Chr1:1861508 1.97E-12 dispersed
Lsi11g01687 Lsi-Chr11:25084675 Lsi11g01285 Lsi-Chr11:21456314 1.12E-09 dispersed
Lsi01g00025 Lsi-Chr1:286398 Lsi11g01285 Lsi-Chr11:21456314 8.55E-11 transposed
Lsi02g01898 Lsi-Chr2:24909436 Lsi11g01285 Lsi-Chr11:21456314 9.42E-84 transposed
Lsi02g02131 Lsi-Chr2:27545024 Lsi11g01285 Lsi-Chr11:21456314 7.16E-09 transposed
Lsi11g01285 Lsi-Chr11:21456314 Lsi04g01811 Lsi-Chr4:25337478 3.92E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01285 Lsi_Chr11 FPKM 7.928198 9.010561 7.098997 7.36206 7.755246 8.092776 7.717826 10.288074 9.464919 9.981207