Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01287 ATGGCATCGGCGCAGAACCCAGCGCCGAACGTGGATCTCTTCGATGCATACTTTCGACGTGCCGATTTGGACCGCGATGGTCGAATTAGTGGCGCTGAAGCGGTTTCCTTCTTTCAAGGCTCCGGATTGCCCAAACAGGTTCTTGCTCAGATTTGGGCGCTTTCGGACCCTAGACAGATTGGTTTCCTTGGTCGGGCGGAGTTTTATAATGCCCTTAGGCTGGTCACTGTAGCACAGAGTAAGAGGGAATTAACTCCTGATATTGTGAAAGCAGCATTGTTTAGCCCAGCTGCAGCTAAAATACCGGCACCACAAATAAATTTCAATACCCAGCCTGCACCTCAGTTCAATTCTACTGCAGCAGTACCTACGCCTCAGAGTGGCATTGTTGCTCAAACGCCCTCCCTAAGTTCTGGGTTGGAATCGCAGGTTTCTCGAAATGTCACTACGAATGTTCTGCCAGTTTCTTCTAGAGAGAGTCAATCTGTAAGGCCTCCGTTGGCAACTTCAAATTCTGCTTTTCATCCAGCACAGGGATTTCCAGGAGTAGGCACTGTTTCGGGGCCACCTCCTACGAATTCAAGCATCTCAAATGATTGGGTTAGTGAACGTGCCAGTGGAGTTCAGGTGACACCCTCACAACCTCCGAATAGAGGAGTCAGTCCTGCTGGAACTCAGGTCGGATTTGGGCAATCAAGTGCAGGACTAACAACTTCTCTACCCCCAAGGCCTCAGACTGCTCCTGGAGTAACGCCGGCTACACCATCACCTGTGGAGAGTAAAGTGCAAGGTATTTCTGGAAATGGGACTGCTTCTGGATCTTATTTTGGAAGAGATGCCTTTGCTGCAACCCCAGTTTCCTCAAAACAAGATGTCCCTGCTGGCAATAAGACTTCCTCATCAGTCCATGTTCCTGTATCTTCTGTTACACAACCAATAGTTAGAGCAACTTCCCTTGATTCTTTGCAGAATTCATTTATGAAACCACCTCTTGCTAATCAGGCCCAACGGAACCAGGCACTTGGGAAACCCAATCAACAGACCATACTGCAATCTGCTTCCTCTGGAATTTCAACAGGAACTCAGAACTCTGTTTCTGGACAGCCTCAGCGCCCTTGGCCTAGAATGACACAGACTGATGTGCAGAAGTATACTAAAGTTTTTGTTGAGGTAGATAAAGATAGAGATGGAAAAATTACTGGTCAAGAAGCACGCAACTTGTTCTTGAGTTGGAGACTGCCAAGAGAGGTTTTAAAGCAAGTCTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATTGCACTCTATTTGTTGGAGCGGCATAGGGAAGGGCACATTCTTCCTGCTATGCTTCCTAGCAACATCATGTTTGATTTTTCCAGCAACGGTCATCCTGTGACTCCAGCTGCATCTAACTATGGCAATGCAGCTTGGAGACCCACAGCTGGTTACCAACAGCACCAAGGGGTTGCTGGGTCTGGTAATCTGCAGGGAGCTCCTACAGTTGGAGTACGTCCACCTATACCTGCTACTGCTTCCCCCGTTGAGGGTGAGCCACAGACCAGTCAACCTAAATCAAAGGTTCCTGTGCTGGAGAAAAATCTTGTTGAAGAATTGGAGAAAGAAATTTTGGACTCTAGACAGAAAATTGAGTACTATCGTACTAAAATGCAGGAACTTGCATTTTTATGGTCACGAGTCATTGCACTGGTTTTGCATTTTGGTGATTGGTGGGCCCGTCCTTATTCTGTTTTAATTCGGCTTTCAATTCTCAATATGTCTTACATGCTTCCAATTCTTAATATGTTGTACAGTTGTGTACTTGTTAGTTGTATAGGACAGGTTTTGTACAAGAGCAGATGTGACAATCGGCTGAATGAAATTTCGGAAAGAGTGTCTTCAGATAAACGTGAGGTAGAGTCCCTTGCTAAGAAGTATGAAGAGAAATACAAACAATCTGGTGATGTAGCCTCCAGATTAACTGTTGAAGAAGCTACATTCCGTGATATACAGGAAAAGAAGATGGAACTGTATCAGGCGATTGTAAAGATGGAACAAGATGGTACTGCAGATGGCATTCTTCAGGCTCGTGCTGATCGTATTCAGTCAGATATTGAAGAGTTAGTGAAATCTCTCAATGAACGCTGCAAAAGTTACGGTTTACGTGCAAAACCAATAACTCTGAGTGAACTTCCTTTCGGTTGGCAGCCTGGCATCCAAGTGGGAGCTGCTGACTGGGATGAAGATTGGGATAAATTTGAAGAGGAAGGTTTCTCTGTTGTCAAGGAGCTCACTCTTGACGTGCAAAATGTCATTGCCCCACCTAAGCAGAAATCTAAGTCAGTTCAAAAAGGAAAACTTGACAGCCAAAACGTTACACCTGCAGCGGATGATGATACCAAGGAAGGAGATTCTGCACCAAATGCCGATACCAAGAGAGAGAAACCTCCCAGTATGGATGAAACAGCTGTTGAAAATGGTTCCACACATGATAATAAAAGTGAAGATGGGTCAGCCAAAAGTGCTCCTAACAGCCCCTTTGCAGCCAAAAGTGCTCCAAACAGCCCTTTTGCACCCAAAAGTGCTCCTAGCAGCCCCTTTGCAAGTAGTGTTATTGGAAGTCCCAAGGAATATATGGACTCCAATTTTGGAAAGATTTCTGGCTTTGATGCTTCACCCCGTGATAAGGACGCTTTAAGTGATCACGGAGGTGCGGGTTCTGTGTTTTCTGGTGACAAGAGCTATGACGAACCAGCTTGGGGAACATTTGATGCGAACGATGATATTGACTCTGTTTGGGGCTTTAACGCAGGAGGTTCCACCAAGACCGACAATGATGTAAACCGAGACAACTATTTTTTCGATTCTGGAGAGTTGGGCTTGAATCCTATTAGAACATATCCATTCCAGGCTAAGCGAAGCACATTTGCTTTTGACGAGTCTGTTCCTAGCACCCCACTCTTCAACTCGGGCAATTCGCCGCATAATTACCACGAGGGATCGGAGCCAAGCTTTGACAGCTTCTCAAGGTTCGATTCTTCCAGCGTGCACGACAGTGGTTTTTTCCCTCCACGTGACACATTTACACGGTTCGACTCAATGCGTAGCAGTAGAGATTTCGACCAGGGTCCTGGATTCTCATCATTTGGTCAATTGGATACACCGCACAGCAGTAGAGACTTTGACCAGGGTGGACCCTCATCACTGACTCGATTTGATTCAATGCGCAGCAGTAAGGACTTTGATCAGGGATTCCCTTCATTGTCACGATTTGATTCGATGCGCAGTAGCAAGGACTTCGACCAGGGATTCCCTTCATTTTCAAGATTCGATTCGATGCGCAGCAGTAAAGACTTTGATCAGGGTCATGGATTCCCCTCATTCGATGATCCAGACCCTTTCGGATCGACAGGGCCGTTTAGGGCGTCCCTGGATAATCAAACTCCAAAGAAAGGTTCAGATAATTGGAGTGCCTTTTAG 3501 46.1 MASAQNPAPNVDLFDAYFRRADLDRDGRISGAEAVSFFQGSGLPKQVLAQIWALSDPRQIGFLGRAEFYNALRLVTVAQSKRELTPDIVKAALFSPAAAKIPAPQINFNTQPAPQFNSTAAVPTPQSGIVAQTPSLSSGLESQVSRNVTTNVLPVSSRESQSVRPPLATSNSAFHPAQGFPGVGTVSGPPPTNSSISNDWVSERASGVQVTPSQPPNRGVSPAGTQVGFGQSSAGLTTSLPPRPQTAPGVTPATPSPVESKVQGISGNGTASGSYFGRDAFAATPVSSKQDVPAGNKTSSSVHVPVSSVTQPIVRATSLDSLQNSFMKPPLANQAQRNQALGKPNQQTILQSASSGISTGTQNSVSGQPQRPWPRMTQTDVQKYTKVFVEVDKDRDGKITGQEARNLFLSWRLPREVLKQVWDLSDQDNDSMLSVREFCIALYLLERHREGHILPAMLPSNIMFDFSSNGHPVTPAASNYGNAAWRPTAGYQQHQGVAGSGNLQGAPTVGVRPPIPATASPVEGEPQTSQPKSKVPVLEKNLVEELEKEILDSRQKIEYYRTKMQELAFLWSRVIALVLHFGDWWARPYSVLIRLSILNMSYMLPILNMLYSCVLVSCIGQVLYKSRCDNRLNEISERVSSDKREVESLAKKYEEKYKQSGDVASRLTVEEATFRDIQEKKMELYQAIVKMEQDGTADGILQARADRIQSDIEELVKSLNERCKSYGLRAKPITLSELPFGWQPGIQVGAADWDEDWDKFEEEGFSVVKELTLDVQNVIAPPKQKSKSVQKGKLDSQNVTPAADDDTKEGDSAPNADTKREKPPSMDETAVENGSTHDNKSEDGSAKSAPNSPFAAKSAPNSPFAPKSAPSSPFASSVIGSPKEYMDSNFGKISGFDASPRDKDALSDHGGAGSVFSGDKSYDEPAWGTFDANDDIDSVWGFNAGGSTKTDNDVNRDNYFFDSGELGLNPIRTYPFQAKRSTFAFDESVPSTPLFNSGNSPHNYHEGSEPSFDSFSRFDSSSVHDSGFFPPRDTFTRFDSMRSSRDFDQGPGFSSFGQLDTPHSSRDFDQGGPSSLTRFDSMRSSKDFDQGFPSLSRFDSMRSSKDFDQGFPSFSRFDSMRSSKDFDQGHGFPSFDDPDPFGSTGPFRASLDNQTPKKGSDNWSAF 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21498193 21507906 + Lsi11G012870.1 Lsi11g01287 674454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01287 1166 Gene3D - 9 104 - -
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 802 844 - -
Lsi11g01287 1166 Pfam Cytoskeletal-regulatory complex EF hand 374 445 IPR000261 GO:0005515
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 1147 1166 - -
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 990 1166 - -
Lsi11g01287 1166 ProSiteProfiles EH domain profile. 380 463 IPR000261 GO:0005515
Lsi11g01287 1166 PANTHER EH DOMAIN 9 573 - -
Lsi11g01287 1166 SMART eh_3 372 468 IPR000261 GO:0005515
Lsi11g01287 1166 SMART eh_3 2 98 IPR000261 GO:0005515
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 990 1023 - -
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 203 244 - -
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 203 261 - -
Lsi11g01287 1166 PANTHER EH DOMAIN 1091 1166 - -
Lsi11g01287 1166 PANTHER EH DOMAIN 622 1066 - -
Lsi11g01287 1166 Coils Coil 632 656 - -
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 514 534 - -
Lsi11g01287 1166 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Lsi11g01287 1166 CDD EH 14 80 IPR000261 GO:0005515
Lsi11g01287 1166 Coils Coil 543 563 - -
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 1047 1119 - -
Lsi11g01287 1166 SMART efh_1 13 41 IPR002048 GO:0005509
Lsi11g01287 1166 SMART efh_1 383 411 IPR002048 GO:0005509
Lsi11g01287 1166 SMART efh_1 417 445 IPR002048 GO:0005509
Lsi11g01287 1166 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 782 923 - -
Lsi11g01287 1166 SUPERFAMILY EF-hand 368 463 IPR011992 -
Lsi11g01287 1166 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 356 375 - -
Lsi11g01287 1166 SUPERFAMILY EF-hand 10 93 IPR011992 -
Lsi11g01287 1166 ProSiteProfiles EF-hand calcium-binding domain profile. 416 448 IPR002048 GO:0005509
Lsi11g01287 1166 Pfam EF hand 15 31 IPR002048 GO:0005509
Lsi11g01287 1166 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1091 1166 - -
Lsi11g01287 1166 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 622 1066 - -
Lsi11g01287 1166 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 9 573 - -
Lsi11g01287 1166 MobiDBLite consensus disorder prediction 845 878 - -
Lsi11g01287 1166 Gene3D - 375 463 - -
Lsi11g01287 1166 CDD EH 384 450 IPR000261 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01287 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101215882 1886.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01086 Lsi-Chr2:12240877 Lsi11g01287 Lsi-Chr11:21498193 2.00E-10 transposed
Lsi05g00569 Lsi-Chr5:7044925 Lsi11g01287 Lsi-Chr11:21498193 2.51E-06 transposed
Lsi11g01287 Lsi-Chr11:21498193 Lsi04g01819 Lsi-Chr4:25374676 1.44E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01287 Lsi_Chr11 FPKM 0.764991 1.236539 0.701543 0.0 0.0 0.0 0.0 0.0 0.0 0.0