Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01292 ATGAGTATGGTTTGGCTTCTTTTATTACTTCTTTGTGTTCAAGGAATTTCAGAAGGGGCCTCAAGAAATGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTCGTTCTGTCAATGGGAAAGTTTCTAAGATTGCCATTGAGGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAACTATCTATTTCCATTTATGATGCAAATTATAGTGGATTTCTTGGTATCACAGGAGTTGCTATTCTTGGTCCACAAGATTCTACAATGGCTCATACACTCTCACATCTTTCTAATGAACTCCATATCCCATTACTGTCATTTACAGCATTAGATCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAGTTCCAAATGACTGCAATTGCTGATATAATTCATTATTACAGTTGGCACGACGTCGTCGTAGTTTTCACCGACGACGATCAATGTCGAAACAGTATGATTGAATTAGGTGATAAACTTGAAGAGAGAAGCTTGAAAATTTCCTCTAAAGTGCCACTTCCCCCTTACCCAACAGCAACAAGAACTCAAGTTCAAGATGCAATGAGAAAGATTAAAATGATGGAATCTCGAGTAATCGTATTGTACACGTTTTCGAAAACCGGTTTCTTGGTTTTCGAAGTGGCTCGAAGCCTTAAAATGATGGAAGCTGGTTATGTTTGGATAACCTCTAGTTGGCTATCAACAGTAATAGATTCTACTTCACCACTTCCTTTGAAAATTGCCAACTCCATCCAAGGAGTTCTTACGCTTCGTTTACACACACCCGATTCGAAAATGAAGCGATCTTTTATATCAAGATGGAACAAGCTGAGTAATGGCTCCTCAATTGGGTTGAATACATATGGCCTATATGCTTATGATACTGTTTGGATGATTGCAAGAGGAGTGAAAAAGTTATTGGATCAAAATGGCACTATCTCATTCTCCAAAGATATAAATGCTGGTAGTCTAACTGGAGAGACCTTGGATTTTAGTTCACTAGAAATCTTTAATGAAGGAAATGATTTGCTCAACAATTTATTGAATATCAGTATGACTGGTTTAACAGGGCCTATTAAGTTTCTAGATAGATCCCCTTTACATCCTTCATATGATATCTTAAATGTAGTGAAATCTGGTATGAAGAGAATTGGATATTGGTCTAACTATTCCGGTTTATCTGTCGTGGCACCTGAAACGTTGTATGGAAAAGAAATTAATCGTTCTATGTTAACCGAACAGTTAAGCAGCACAATGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGCTGGGTTCTTCCGCTCGATGAGCGGTTAAGAATCGGCGTTCCACGTAGAGTTAGTTATCAGGAATTCGTGACACCGGGAAATGGAAACGGAACAATCAAAGGATACTGCATTGATGTGTTCATTGCTGCTATTAATTTGCTTCCATATCCAGTTAATTATGACTTCATTTTGTTTGGAGATGGTGAAGAGAATCCTAGCTACCTTGAGCTTGTAAATAAAGTTGCATTGAAAGTAAGTACATTTTCAGAACTCTTTTGTAGATTCTTGTTAGATGATATAATATTAAATTTATGTTCACCTATCAGCTTAAGCTTTTGGGTCAATCGGTGA 1659 37.67 MSMVWLLLLLLCVQGISEGASRNEVVKVGAIFSLRSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIYDANYSGFLGITGVAILGPQDSTMAHTLSHLSNELHIPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMTAIADIIHYYSWHDVVVVFTDDDQCRNSMIELGDKLEERSLKISSKVPLPPYPTATRTQVQDAMRKIKMMESRVIVLYTFSKTGFLVFEVARSLKMMEAGYVWITSSWLSTVIDSTSPLPLKIANSIQGVLTLRLHTPDSKMKRSFISRWNKLSNGSSIGLNTYGLYAYDTVWMIARGVKKLLDQNGTISFSKDINAGSLTGETLDFSSLEIFNEGNDLLNNLLNISMTGLTGPIKFLDRSPLHPSYDILNVVKSGMKRIGYWSNYSGLSVVAPETLYGKEINRSMLTEQLSSTMWPGGLTTKPRGWVLPLDERLRIGVPRRVSYQEFVTPGNGNGTIKGYCIDVFIAAINLLPYPVNYDFILFGDGEENPSYLELVNKVALKVSTFSELFCRFLLDDIILNLCSPISLSFWVNR 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21564679 21571434 + Lsi11G012920.1 Lsi11g01292 674459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01292 552 SUPERFAMILY Periplasmic binding protein-like I 20 444 IPR028082 -
Lsi11g01292 552 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 518 - -
Lsi11g01292 552 PANTHER GLUTAMATE RECEPTOR 3.3 12 518 - -
Lsi11g01292 552 Pfam Receptor family ligand binding region 44 391 IPR001828 -
Lsi11g01292 552 Gene3D - 132 406 - -
Lsi11g01292 552 Gene3D - 449 522 - -
Lsi11g01292 552 Gene3D - 44 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00138 Lsi-Chr10:2162543 Lsi11g01292 Lsi-Chr11:21564679 6.04E-126 dispersed
Lsi11g01292 Lsi-Chr11:21564679 Lsi11g01459 Lsi-Chr11:23172759 6.49E-111 dispersed
Lsi11g01292 Lsi-Chr11:21564679 Lsi04g01826 Lsi-Chr4:25427138 1.25E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01292 K05387 - csv:101208602 877.085