Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01295 ATGTGGGGTTTGAAAAGTAAGATTTTAGAACAAGAAGAAGGGTTTAGAGAGAGAGAATTGATGAAAGAGGTTGAAGGAAGAAGGGTTTGTCAGGAGTTTTCAGCTGGGTATTATGGTCTTTGTGCTGTTGGAGGAATGCTCAGTGCTGGGACAACCCATCTTGCTATTACACCTCTTGATGTCTTGAAGGTTAATATGCAGGTTAATCCAATCAAGTACCATGGCATTTCTTCTGGTTTTTCTACTCTTTGGAGGGAACAGGGTCCTTCATCCCTTTGGAGAGGTTGGTCGGGCAAGTTATTTGGGTACGGTGTTCAAGGCGGGTTCAAATTCGGTCTCTATGAGTACTTTAAGAAGTTTTACTCTGATTTGCTGGAAGGCCATAGGAGAAGTTCCATATACTTTCTCAGCAGTGCTTCTGCTCAAGTGTTTGCTGATATTGCTCTCTGTCCTTTTGAAGCTGTCAAGGTCAGAGTCCAGGCACAACCCTCTTACGCCAAGGGGTTGGCCGATGGATTTCCAAAGTTATACTACAGTGAAGGTCTTTCGGGTTTCTACAGAGGGCTTTTTCCACTTTGGGGACGAAATCTTCCATTCTCCATGATTATGTTCTCAACATTTGAGCATTCAGTGAACTTCATATATCAAAATATCATTCAGCGTAGAAAGGAAGATTGCTCGAGAACCCAACAGCTCGGCGTTTCATGTTTAGCTGGCTATACAGCTGGAGCTGTTGGAACTTTTGTCTCAAATCCAGCTGATAACATTGTGTCCTCTCTTTATAATAAGAAGGCTGATAATATACTGCAGGCAGTGAAGAACATAGGATTTAGCAATTTATTTATTAGAAGCCTTCCTGTCAGAATTACAATTGTTGGTCCTGTTATTACTTTGCAGTGGTTCTTCTATGACACCATTAAAGTGCTAAGTGGACTGTAA 939 41.75 MWGLKSKILEQEEGFRERELMKEVEGRRVCQEFSAGYYGLCAVGGMLSAGTTHLAITPLDVLKVNMQVNPIKYHGISSGFSTLWREQGPSSLWRGWSGKLFGYGVQGGFKFGLYEYFKKFYSDLLEGHRRSSIYFLSSASAQVFADIALCPFEAVKVRVQAQPSYAKGLADGFPKLYYSEGLSGFYRGLFPLWGRNLPFSMIMFSTFEHSVNFIYQNIIQRRKEDCSRTQQLGVSCLAGYTAGAVGTFVSNPADNIVSSLYNKKADNILQAVKNIGFSNLFIRSLPVRITIVGPVITLQWFFYDTIKVLSGL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21591833 21595948 + Lsi11G012950.1 Lsi11g01295 674462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01295 312 Pfam Mitochondrial carrier protein 43 122 IPR018108 -
Lsi11g01295 312 Pfam Mitochondrial carrier protein 134 216 IPR018108 -
Lsi11g01295 312 SUPERFAMILY Mitochondrial carrier 40 305 IPR023395 -
Lsi11g01295 312 Gene3D Mitochondrial carrier domain 41 308 IPR023395 -
Lsi11g01295 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 129 213 IPR018108 -
Lsi11g01295 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 36 120 IPR018108 -
Lsi11g01295 312 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 21 312 IPR044677 GO:0005315|GO:1990547
Lsi11g01295 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 309 IPR018108 -
Lsi11g01295 312 PANTHER MITOCHONDRIAL PHOSPHATE CARRIER PROTEIN 1, MITOCHONDRIAL 21 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00822 Lsi-Chr9:9426207 Lsi11g01295 Lsi-Chr11:21591833 1.85E-87 dispersed
Lsi11g01295 Lsi-Chr11:21591833 Lsi10g01460 Lsi-Chr10:18705393 1.25E-16 dispersed
Lsi11g01295 Lsi-Chr11:21591833 Lsi03g02209 Lsi-Chr3:33099706 2.44E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01295 K15102 - csv:101219895 572.778