Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01302 ATGGCTTTCTCTACCTTCTCCAAAACAACCCTCATCCTCTCTGCAACTTTATTCATCACTTACGCTATCGCTCATGATTTCTCGATTGTAGGCTATTCCCCTGAGCACTTAGCCTCCATGGATAAAACCATCGAGCTGTTCGAGTCATGGATGTCGAAGCATGGTAAAATGTATCGGAGTATTGAAGAGAAGCTCCATAGATTTGAGATATTCATTGACAATTTGAAGCACATTGATGAGACAAACAAGAAGGTTTCTAGCTATTGGCTGGGATTGAATGAATTTGCAGACCTGAGCCATGAAGAGTTTAAGAGTAAATATTTGGGATTGAAAGTTGAGTTTCCAAGGGAAAGGTCGACTCGTGGGTTTAGTTATAGAGATGTGGAGGATTTGCCCGAGTCGGTGGATTGGAGAAGTAAAGGAGCTGTTACTCCTGTCAAGAACCAAGGCTCCTGTGGTCTCTTTCTTTCTCCATCTATTTATTTCTACCTAGTTATGGTAAGAGTTCAAAGGAGTTGCTGGGCATTTTCGACCGTGGCGGCAGTGGAGGGGATAAACCAAATTGTCACTGGAAATCTAACCTCCTTGTCCGAACAAGAATTGATCGACTGTGACCGAAGCTTTAACAATGGGTGCTATGGCGGTTTGATGGATTACGCCTTCCAATACATAATGTCAAATTCTGGACTTCGAAAGGAGGAAGACTACCCATATCTAATGGAGGAAGGAAGATGTATTAGAGAAAAGGAACAATTTGAGGTAGTGACCATTAGCGGTTATGAAGACGTGCCAGCAAATGATGAACAGAGTCTCCTAAAAGCATTGAGTCACCAACCTGTCAGTGTAGCCATTGAGGCTTCTGGCAGAAATTTCCAATTCTATAAAGGGGGAATATTCACAGGTCGTTGTGGAACCGACATGGATCACGGTGTGACAGCCGTTGGGTATGGTTCATCACAGGGAACAGACTACATTATAGTAAAGAACTCATGGGGACCAAAATGGGGAGAAAATGGATACATTAGGATGAAGAGAAATACAGGAAAACCTGAAGGACTATGTGGAATCAACCAAATGGCTTCTTATCCAACCAAAGAGAAATAA 1104 42.57 MAFSTFSKTTLILSATLFITYAIAHDFSIVGYSPEHLASMDKTIELFESWMSKHGKMYRSIEEKLHRFEIFIDNLKHIDETNKKVSSYWLGLNEFADLSHEEFKSKYLGLKVEFPRERSTRGFSYRDVEDLPESVDWRSKGAVTPVKNQGSCGLFLSPSIYFYLVMVRVQRSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDRSFNNGCYGGLMDYAFQYIMSNSGLRKEEDYPYLMEEGRCIREKEQFEVVTISGYEDVPANDEQSLLKALSHQPVSVAIEASGRNFQFYKGGIFTGRCGTDMDHGVTAVGYGSSQGTDYIIVKNSWGPKWGENGYIRMKRNTGKPEGLCGINQMASYPTKEK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21647277 21648947 + Lsi11G013020.1 Lsi11g01302 674469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01302 367 PANTHER CYSTEINE PROTEASE XCP1-LIKE 24 365 - -
Lsi11g01302 367 SUPERFAMILY Cysteine proteinases 42 364 IPR038765 -
Lsi11g01302 367 Pfam Papain family cysteine protease 131 153 IPR000668 GO:0006508|GO:0008234
Lsi11g01302 367 Pfam Papain family cysteine protease 172 364 IPR000668 GO:0006508|GO:0008234
Lsi11g01302 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 365 - -
Lsi11g01302 367 SMART Inhibitor_I29_2 47 103 IPR013201 -
Lsi11g01302 367 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Lsi11g01302 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Lsi11g01302 367 SMART pept_c1 131 364 IPR000668 GO:0006508|GO:0008234
Lsi11g01302 367 CDD Peptidase_C1A 132 363 IPR039417 -
Lsi11g01302 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Lsi11g01302 367 Gene3D Cysteine proteinases 26 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01302 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - csv:101206340 682.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00958 Lsi-Chr1:7765683 Lsi11g01302 Lsi-Chr11:21647277 2.48E-120 dispersed
Lsi03g00521 Lsi-Chr3:6054071 Lsi11g01302 Lsi-Chr11:21647277 2.65E-126 dispersed
Lsi04g01527 Lsi-Chr4:22877367 Lsi11g01302 Lsi-Chr11:21647277 8.62E-128 dispersed
Lsi08g01359 Lsi-Chr8:21908730 Lsi11g01302 Lsi-Chr11:21647277 2.84E-23 dispersed
Lsi10g00095 Lsi-Chr10:1518714 Lsi11g01302 Lsi-Chr11:21647277 5.34E-109 dispersed
Lsi11g00782 Lsi-Chr11:9068160 Lsi11g01302 Lsi-Chr11:21647277 3.16E-90 dispersed
Lsi11g00783 Lsi-Chr11:9071714 Lsi11g01302 Lsi-Chr11:21647277 3.16E-90 dispersed
Lsi05g02071 Lsi-Chr5:27620481 Lsi11g01302 Lsi-Chr11:21647277 3.15E-08 transposed
Lsi11g01302 Lsi-Chr11:21647277 Lsi04g01835 Lsi-Chr4:25467485 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01302 Lsi_Chr11 FPKM 0.963163 0.967113 0.681389 0.665654 5.24238 5.278687 5.063205 0.546064 0.709538 0.674111