Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01303 ATGGAGAGCGCGTCGGAGCTGGTGCCATTTCCACTGCTGCTCACACCGATTGAGTCCAATTACCGAGCCTGCACCATCCCCTACCGATTCCCTTCCGATAATCCTCGCAAGCCCACCCCCATTGAGCTTTCATGGATTGACGTCTTCTACAATGTCATCCCTTCATTCAAAGAACGGGCGGCGAGTGATCCCACTGTTCCAGATGCTGAGACAAAAGCTGAAAAATTTGCCCAGAGGTATGCTCAAATACTTGATGACTTGAAGAAAGATCCTGAAAGTCATGGAGGACCACCTGATTGCATTGATGAAGAGAATGCAAAGGCTATAACCTTATTTGCTGAAGTAATTCGTCTGAATGATGCCATTGAAGATGATAATAAGCGTTTGGAGAATCTTGTTAGAGGAATATTTGCTGGGAACATTTTTGATCTTGGTTCGGCTCAGCTAGCTGAAGTTTTCTCAAGGGATGGTATGTCTTTCTTAGCGAGTTGTCAAAATCTTGTTCCTCGTCCTTGGGTGATTGATGATTTGGACGCATTCAAACTCAGATGGAGTAAAAAGTCATGGAAGAAGGTTATAATATTTGTTGATAACTCCGGTGCAGATATTATTTTGGGCATTTTGCCATTTGCTAGAGAGTTACTTCGGCGTGGAACTCAGGTTGTCTTAGCGGCTAATGACTTGCCCTCAATTAACGATGTAACTTATCATGAACTAATTGAAATTTTATCACAGCTGAAGGATGACCATGGACAGCTTGTGGGGGTTGATACTTCCAACCTTTTAGTCGCCAATTCTGGCAATGATTTGCCCGTCATTGACCTTACTCAAGTATCCCAGGAGCTTAGCTACCTGGCAGCTGATGCAGATCTAGTTGTCTTGGAAGGAATGGGTCGTGGAATAGAGACAAATCTTTATGCTCAATTTAAGTGTGATTCGCTAAAGATTGGCATGGTAAAGCATGTGGAGGTTGCACAGTTTCTTGGAGGAAGGCTCTACGATTGTGTCTTCAAGTACAATGAAGTTTCTAGTTGA 1035 43.48 MESASELVPFPLLLTPIESNYRACTIPYRFPSDNPRKPTPIELSWIDVFYNVIPSFKERAASDPTVPDAETKAEKFAQRYAQILDDLKKDPESHGGPPDCIDEENAKAITLFAEVIRLNDAIEDDNKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLDAFKLRWSKKSWKKVIIFVDNSGADIILGILPFARELLRRGTQVVLAANDLPSINDVTYHELIEILSQLKDDHGQLVGVDTSNLLVANSGNDLPVIDLTQVSQELSYLAADADLVVLEGMGRGIETNLYAQFKCDSLKIGMVKHVEVAQFLGGRLYDCVFKYNEVSS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21648881 21653625 - Lsi11G013030.1 Lsi11g01303 674470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01303 344 PIRSF UCP030210 101 344 IPR016949 -
Lsi11g01303 344 PIRSF UCP030210 7 102 IPR016949 -
Lsi11g01303 344 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 173 343 - -
Lsi11g01303 344 PANTHER PANTOTHENATE KINASE 9 100 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lsi11g01303 344 PANTHER BNAC03G47610D PROTEIN 9 100 - -
Lsi11g01303 344 PANTHER BNAC03G47610D PROTEIN 102 342 - -
Lsi11g01303 344 PANTHER PANTOTHENATE KINASE 102 342 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lsi11g01303 344 Pfam Damage-control phosphatase ARMT1-like domain 102 333 IPR002791 -
Lsi11g01303 344 Gene3D - 28 121 IPR035073 -
Lsi11g01303 344 SUPERFAMILY AF1104-like 9 341 IPR036075 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01303 K24854 K24854; damage-control phosphatase, subfamily II, stand-alone protein [EC:3.1.3.-] - csv:101221235 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01303 Lsi-Chr11:21648881 Lsi02g00371 Lsi-Chr2:3196590 6.82E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g307 . . . . . Bpe12g00157 . . Cmo19g00830 . . . . . . . Cpe15g00651 Bhi05g01551 Tan02g0548 . . Hepe02g0351 . . . . . . . . . . . Cone3ag1254 Cone10ag1207 . Csa07g00208 . . Blo04g00611 Blo13g00465 . . Bpe15g00776 . Bma03g00643 Bma08g00710 . . . . . . Car19g00627 . . . . . . . . . . . . . . . . Lsi11g01303 . Chy01g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007984 0 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01303 Lsi_Chr11 FPKM 4.726264 4.785351 8.502461 8.486867 5.611194 6.061353 5.882995 6.749104 5.576801 6.365596